1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactaacttatttctgcccgtacctgtggtgatgtttgtttacatatagtttactatggtaataacatccatcctgcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCGAGTCACAGAATGAAGAAAGAGCCAAAGAGAAGGAGGAGAAAGATCTTG
species | Zea mays |
transcript | GRMZM5G822591_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|37375445|gb|CF624160.1|CF624160
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|31664357|gb|CD573082.1|CD573082
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|60399410|gb|DN232222.1|DN232222
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|60395619|gb|DN228489.1|DN228489
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|67016082|gb|CO444831.1|CO444831
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|29945571|gb|CB815707.1|CB815707
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCEST: gi|29129934|gb|CB380638.1|CB380638
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
EST: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAG TTCATCCGTGAATACNCTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
genomic: TTGCATGGATGAATAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtaactaact ... gcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATC
gatgtttgtttacatatagtttactatggtaataacatccatcctgcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCGAGTCACAGAATGAAGAAAGAGCCAAAGAGAAGGAGGAGAAAGATCTTG
taataac putative branch site (score: 234)
tttacatatagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaacttatttctgcccgtacctgtggtgatgtttgtttacatatagtttactatggtaataacatccatcctgcgtgtgcagTTCATCCGTGAATACACTAGCAAGGTGGATGATTTAGTGAAGGACAAAATCGAGTCACAGAATGAAGAAAGAGCCAAAGAGAAGGAGGAGAAAGATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA