1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcttattgcatctttttcactctagataatttatcagatacatatttttgtccttatattgctacagcagttgaaactgctcatctcatgttgtaactgcacttggtaaatgaattttgtatgttgtcctctgtttggtgtgcaaatatgctactaatattgccgtgattctctgcttactatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAGAGGTTGAG
species | Zea mays |
transcript | GRMZM5G821551_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAEST: gi|31349934|gb|CD434291.1|CD434291
genomic: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGA
EST: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAEST: gi|32806022|gb|CD958256.1|CD958256
genomic: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTA
EST: GATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAEST: gi|32840640|gb|CD980321.1|CD980321
genomic: GATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGA
EST: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAAATCTCCAAGEST: gi|31351285|gb|CD435642.1|CD435642
genomic: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAG
EST: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAEST: gi|31349068|gb|CD433425.1|CD433425
genomic: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGA
EST: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACT GACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGA
genomic: AGTGTGTGGGTATTGCTGATAGATCTGCATATGATTTGAAAGCTCACACTgtaagcttat ... tatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGA
tggtgtgcaaatatgctactaatattgccgtgattctctgcttactatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAGAGGTTGAG
ctatctc CT-rich tract
tactaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttattgcatctttttcactctagataatttatcagatacatatttttgtccttatattgctacagcagttgaaactgctcatctcatgttgtaactgcacttggtaaatgaattttgtatgttgtcctctgtttggtgtgcaaatatgctactaatattgccgtgattctctgcttactatctcacagGACAAAAGCGGTGTCCCACTTGTTGCTCATGAAAAATTCTCCAAGCCTAGAGAGGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG