Sequence
atgc intronic sequence ATGC exonic sequencegttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G820727_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 3'ss of exon 5
gttatttagtgtacacttc------tcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggct-------------------------------gtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC
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gttattttctgtatgatttatgttgtcttatgtgtttaaaatggttggtgaa-tgtaaatgtacagaaatgaagttcattttctgtatgtttaccttcagtttcccaaagtagtccaaaaatgtttgggtatcatttctgagcacaatatgttctgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTCGACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|108824145|gb|EC278153.1|EC278153EST: CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAG ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
genomic: CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagt ... ttttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC
ttatttt CT-rich tract
taagtacagtatatta TA-rich tract