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gtgtgttcatatttttttgtttttccttgtatttgttgctagctaggggtaggaatatacattgaaatttggcaacttgcagtgttttataactactgaagtaactgggcttatgaatttcttatcttcattttcctgatacttttatactgagatttctattgcttcatgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCATGATATTGGGGCCACCAATCGTGGCTGCTATCATCTACATAGTACAG
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCTCTATTCAACTTTTGTTATAGAAGCTCGACATGNTTTTAACAAG CAAACTATATGGCTNCT-CATNAGGGGA-ATGATCAAAAGAATTTTACTATEST: gi|149101643|gb|EE187775.2|EE187775
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCT-CTTCATTAGGG-ATATGATCAAAGGAATTTTACTAT
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|71767568|gb|DR965505.1|DR965505
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|76293281|gb|DV032849.1|DV032849
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|71446633|gb|DR827683.1|DR827683
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|71330641|gb|DR802092.1|DR802092
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|211231531|gb|FL255915.1|FL255915
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|211231534|gb|FL255918.1|FL255918
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATCACCAAAGGAATTTTACTATCCEST: gi|211231535|gb|FL255919.1|FL255919
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|6194775|gb|AW146879.1|AW146879
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|50322421|gb|CO517547.1|CO517547
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|211274143|gb|FL330839.1|FL330839
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGGATTTTACTATCCEST: gi|78114998|gb|DV533386.1|DV533386
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|78113447|gb|DV531839.1|DV531839
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|50334362|gb|CO529488.1|CO529488
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCEST: gi|71436743|gb|DR817793.1|DR817793
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
EST: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAG CAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
genomic: TCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgttcat ... tgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCC
tcttcattttcctgatacttttatactgagatttctattgcttcatgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCATGATATTGGGGCCACCAATCGTGGCTGCTATCATCTACATAGTACAG
tcctgat putative branch site (score: 89)
atacttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttcatatttttttgtttttccttgtatttgttgctagctaggggtaggaatatacattgaaatttggcaacttgcagtgttttataactactgaagtaactgggcttatgaatttcttatcttcattttcctgatacttttatactgagatttctattgcttcatgccttgtagCAAACTATATGGCTCTTCATTAGGGATATGATCAAAGGAATTTTACTATCCATGATATTGGGGCCACCAATCGTGGCTGCTATCATCTACATAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT