1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttctcacacttcattcagacttgtaacttgatacaaaatcactatcctatgttgagttaacaaggattttatactcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGCAAGTCCCCGTCGTGGAGCGAGTGGCTGTATAATAAAGTAACTTACATCT
species | Zea mays |
transcript | GRMZM5G813363_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGCEST: gi|101387839|gb|EB815934.1|EB815934
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
EST: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGCEST: gi|101391594|gb|EB817733.1|EB817733
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
EST: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGGTTCCCCTCTGTGC
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
gatacaaaatcactatcctatgttgagttaacaaggattttatactcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGCAAGTCCCCGTCGTGGAGCGAGTGGCTGTATAATAAAGTAACTTACATCT
agttaac putative branch site (score: 3)
tactcttc putative PPT
attttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctcacacttcattcagacttgtaacttgatacaaaatcactatcctatgttgagttaacaaggattttatactcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGCAAGTCCCCGTCGTGGAGCGAGTGGCTGTATAATAAAGTAACTTACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG