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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtactcctattccctgccctttaagcttttagtttggacgtttgaactttgaactataagaatgatctcaattgtttcttctacatgacttgttctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812553_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g03400.1 (Oryza sativa), 3'ss of exon 5
-----------------gtgggtactc---ctattc---cctgccctttaagcttttagtttggacgtttga--actttgaactataagaatgatct---caattg--tttcttctaca-tgac--------ttgttctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
                  | | || ||   | | ||    |  || | ||  || |||  ||   | || ||  | | ||||||  ||   |  | |   || | |  ||| |||   | |||         || ||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||
gtgagtgtacttagtttctagctattctatccaatcagatcacccttctagcctcttaaattaagcattagactattctgaactgaaatgtttgtttatgcactggaatttgttcggtagtgaagcggattgtttttctctgacagCTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTG

upper sequence: GRMZM5G812553_T02 (Zea mays), 3'ss of exon 5
lower sequence: EFJ04852 (Selaginella moellendorffii), 3'ss of exon 5
gtgggtactcctattccctgccctttaagcttttagtttggacgtttgaactttgaactataagaatgatct-caattgtttcttctacatgacttgttctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
                                 |||   ||  | || ||  |  | |  |  |  ||| || ||| ||        |    | | | |  ||| |||||||| || |||||||| ||||| ||||||||||| ||||| |||||
--------------------------------gtaggccggttgcttaaaactcaatcctt--gcttgacctgcaaatgcaa-----atgaaaatggatgcctg-cagCTCATCCCTCTTGGAACAGGCTCGGATTTTGCTCGAACATTCGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|211467175|gb|FK976084.1|FK976084
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTG
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30087318|gb|CB885526.1|CB885526
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACAT
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACAT
EST: gi|50334433|gb|CO529559.1|CO529559
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCTTTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCCACGGCGCTGGGT                         CTCCATTCCCACTTGGAACTGGCTCAGATTTTGCTCCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTC-ATTCC-ACTTGGAACTGGCTCAGATTTTGCTC-GGACATTTGGCTG
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78121934|gb|DV540318.1|DV540318
EST:     ATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: ATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91050474|gb|EB160892.1|EB160892
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGG
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGG-CTG
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|8102673|gb|AW927320.1|AW927320
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|31406361|gb|CD485093.1|CD485093
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaactataagaatgatctcaattgtttcttctacatgacttgttctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
                                        cttgttctct  CT-rich tract
      tataagaat  TA-rich tract