1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaagcgaaaaatatccggaagtggatttttgttctttgccgccagaaacttattttacgtattgcgttacacaggatctggctgttatgttatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTCATGCAAAGAACGGCAGTG
species | Zea mays |
transcript | GRMZM5G809265_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|211287343|gb|FL459821.1|FL459821
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|78021708|gb|DV490095.1|DV490095
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|211183625|gb|FL445775.1|FL445775
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|211289066|gb|FL443482.1|FL443482
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|12968810|gb|BG265846.1|BG265846
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAG ATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
genomic: CAAAAACACGAGAAAATGTTGAGAAATGTTTTGAAGAACTTGCATTGAAGgtatgcttgg ... tatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAG
aaacttattttacgtattgcgttacacaggatctggctgttatgttatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTCATGCAAAGAACGGCAGTG
ttatctt CT-rich tract
ttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagcgaaaaatatccggaagtggatttttgttctttgccgccagaaacttattttacgtattgcgttacacaggatctggctgttatgttatcttgcagATCCTTGAGGTCCCTAGTCTCCTGGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTCATGCAAAGAACGGCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - aaaaata
- - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - tgccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgtt