1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgtttggggtttctgacctaaggtcaaagtttttgctatttttttgttggcctcatccagcttgatagattattgattcatttctgatttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
species | Zea mays |
transcript | GRMZM5G808775_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGEST: gi|71765796|gb|DR963733.1|DR963733
genomic: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGG
EST: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGEST: gi|60400693|gb|DN233500.1|DN233500
genomic: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGG
EST: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGEST: gi|31405540|gb|CD484272.1|CD484272
genomic: AGTTGGCAAGTCTAGTTGACAAAGAAGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGG
EST: AGAAATATCTTCCATATTTTTAGAG TTTTTGGATCTCTTTGG-GATGCAAAGTCAATCAGGAAGGCTTCAACTCGG
genomic: AGAAATATCTTCCATATTTTTAGAGgtaaaatacc ... ttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGG
ttgttggcctcatccagcttgatagattattgattcatttctgatttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
ttctgat putative branch site (score: 151)
tttatct CT-rich tract
attattgattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttggggtttctgacctaaggtcaaagtttttgctatttttttgttggcctcatccagcttgatagattattgattcatttctgatttatctgcagTTTTTGGATCTCTTTGGTGATGCAAAGTCAATCAGGAAGGCTTCAACTCGGCATACAACTCTTTTTTCATGTAAGAGAAGCATTCTGCCATCAAAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tctgttt
- - - - - -tttctga
- - - - - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca