1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttcaggaaatatgcgattgtttctttctttctgcagaagtcagtaatcgtgataagcgagatttaatagttgtttcttacaattttatgttttactttctatgatgtttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAGCCTAGCAATGTCTTCTTGGACAAGAATTACCTTGCAAAG
species | Zea mays |
transcript | GRMZM5G806108_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTG GAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAGEST: gi|78091069|gb|DV519443.1|DV519443
genomic: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTGgtaagtttca ... ttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAG
EST: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTG GAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAGEST: gi|76923142|gb|DV169354.1|DV169354
genomic: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTGgtaagtttca ... ttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAG
EST: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTG GAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAG
genomic: TACCATGGAAAAATAGGGTCCAAATTGCCATCGATGTTGCCAATGCTCTGgtaagtttca ... ttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAG
ttaatagttgtttcttacaattttatgttttactttctatgatgtttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAGCCTAGCAATGTCTTCTTGGACAAGAATTACCTTGCAAAG
ttcttac putative branch site (score: 12)
tttcttacaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcaggaaatatgcgattgtttctttctttctgcagaagtcagtaatcgtgataagcgagatttaatagttgtttcttacaattttatgttttactttctatgatgtttggttgcagGAGTACCTTCATTTTTATTGTGATCCTCCACTATACCATGGAGATGTTAAGCCTAGCAATGTCTTCTTGGACAAGAATTACCTTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG