1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atagttttcattttgcattcttctgttattgcccactactattttttagtgcatcctgatgttcaattttatggtcttgctgatgaaattctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCTGGGCGTATAATAGACCATTTACGCAACTCTCTTTCTGTTGGGCTTGAAG
species | Zea mays |
transcript | GRMZM5G804064_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTGATATCAGATGTTGTCTCATCGTTGGTGGTCTTTCAACTAAG GTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCTEST: gi|19057848|gb|BM736515.1|BM736515
genomic: ACTGATATCAGATGTTGTCTCATCGTTGGTGGTCTTTCAACTAAGgttttcttgc ... ctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCT
EST: TGGTCTTTCAACTAAG GTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCTEST: gi|20301192|gb|BQ164135.1|BQ164135
genomic: TGGTCTTTCAACTAAGgttttcttgc ... ctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCT
EST: AATTCACTGATATCAGATGTTGTCTCATCGTTGGTGGTCTTTCAACTAAG GTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCT
genomic: AATTCACTGATATCAGATGTTGTCTCATCGTTGGTGGTCTTTCAACTAAGgttttcttgc ... ctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCT
ttagtgcatcctgatgttcaattttatggtcttgctgatgaaattctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCTGGGCGTATAATAGACCATTTACGCAACTCTCTTTCTGTTGGGCTTGAAG
tgctgat putative branch site (score: 33)
atgaaattctatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttttcattttgcattcttctgttattgcccactactattttttagtgcatcctgatgttcaattttatggtcttgctgatgaaattctatattcagGTTCAAGAAGTTGCTCTAAGATCAATGCCTGACATCGTTGTAGCAACCCCTGGGCGTATAATAGACCATTTACGCAACTCTCTTTCTGTTGGGCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -tttcatt
- - - - - - -tgcattc
- - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - ccactac
- - - - - - - - - - - - - - - - - - - - - - - - -tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg