1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggtttattggacctactgaagtagtttggggagtaaagggttatatgttgcagtaaaatggacttctccatgtataatgaaatatcttgctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGCATTGACAGAGGCAG
species | Zea mays |
transcript | GRMZM5G803610_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAG ATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGCEST: gi|78107381|gb|DV525799.1|DV525799
genomic: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAGgttaattgtc ... ctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGC
EST: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAG ATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGCEST: gi|74232550|gb|DT640464.1|DT640464
genomic: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAGgttaattgtc ... ctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGC
EST: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAG ATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGC
genomic: GTTTTGGCTTTTTTGTGGATGAGGCTGGACAAGTTAAGAAGAAACCACAGgttaattgtc ... ctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGC
atgttgcagtaaaatggacttctccatgtataatgaaatatcttgctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGCATTGACAGAGGCAG
tcttgct CT-rich tract
atgtataatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtttattggacctactgaagtagtttggggagtaaagggttatatgttgcagtaaaatggacttctccatgtataatgaaatatcttgctattgtcagATGCTGTGCGCAAGAATTGGAGACCATGTAGAAATAGGGGCAAATACATGCATTGACAGAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - cctactg
- - - - - - - - - - - - - - - - - - - - - - - tgttgca