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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttctattgttgatgcctttttcagcacttgtatcaaatgatgccctcaaacagtgttttttttattttgttgctcgatatctgaaatatagtaataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAG

Basic information

species Zea mays
transcript GRMZM5G801369_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 3'ss of exon 4
gttggtttctattgttgatgcctttttcagcacttgtatcaaatgatgccctcaaacagtgtttttttta----------ttttgttgctcgatatctgaaatatagt---aat-------accaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAG
||| ||| | |||     |  ||||||||| |||||||||||   || || |  ||  |||  | |||||          ||||||   | ||  | ||   |||  |   ||        |||| ||||||||||||| | | |||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| || ||||||
gttagttaccatt-----tcactttttcagtacttgtatcaaccaatacctttgaatggtgggtcttttaacctcttctgttttgtatgtggacgtgtggtttatgatctgaaccatatgaaccatcagGATCTTACTAGCCAGCCAAGATACCTTATTACCTTCACAGTTGGATACTCTCAAAAGGCAAATATTGATGCAGCAGTCAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438212|gb|DR819262.1|DR819262
EST:     TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAG                         GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
genomic: TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAGgttggtttct ... ataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
EST: gi|149075694|gb|EE164238.2|EE164238
EST:     TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAG                         GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
genomic: TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAGgttggtttct ... ataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
EST: gi|149062889|gb|EE157609.2|EE157609
EST:     TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAG                         GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
genomic: TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAGgttggtttct ... ataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAG                         GATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT
genomic: TGTCTGAAACAGACCTTTATCTCCGGAGATTGTGGGGTGAACCTAGTGAGgttggtttct ... ataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagtgttttttttattttgttgctcgatatctgaaatatagtaataccaccagGATCTTACTACCAAACCAAGATACCTTGTTACATTTACAGTGGGATACTCTCAAAAGGCAAACATTGATGCAGCGGTGAAAAAG
     tgttttttttattttg  TA-rich tract