1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgttatcatgtttggatttttatgtctgattattttttactgtcattgataaggttcgggagcaagaaccttaaccacctttatcacatcaggatttatcagaattttggcaaccttatgttattgtaatgcaccaaccatatactgatcctcacagtcgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTCGCAACTGGAATA
species | Zea mays |
transcript | GRMZM2G573867_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCAT GCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTCEST: gi|32823434|gb|CD963156.1|CD963156
genomic: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCATgtatgtgtta ... cgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTC
EST: GGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCGAT GCTATCGAGACTGGGACTGCATATGGAGCACGGCTCCATGGGGAGGCTGTEST: gi|32793894|gb|CD946130.1|CD946130
genomic: GGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCC-ATgtatgtgtta ... cgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGT
EST: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCAT GCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTCEST: gi|7031240|gb|AW461128.1|AW461128
genomic: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCATgtatgtgtta ... cgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTC
EST: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCAT GCTATCGAGACTGAGACTGGATATGGAGCATGGCTCCATGGGGAAGGCTGTEST: gi|32849355|gb|CD989036.1|CD989036
genomic: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCATgtatgtgtta ... cgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGA-GGCTGT
EST: AGGAAAGTGGCCTACGAGCAACACTTAACCTGGGTCACACATTTGGCCAT GCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTC
genomic: AGGAAAGTGGCCTACGAGCAACACTAAACCTGGGTCACACATTTGGCCATgtatgtgtta ... cgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTC
ccttatgttattgtaatgcaccaaccatatactgatcctcacagtcgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTCGCAACTGGAATA
tcctcac putative branch site (score: 122)
ttattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttatcatgtttggatttttatgtctgattattttttactgtcattgataaggttcgggagcaagaaccttaaccacctttatcacatcaggatttatcagaattttggcaaccttatgttattgtaatgcaccaaccatatactgatcctcacagtcgtttgtcagGCTATCGAGACTGGGACTGGATATGGAGCATGGCTCCATGGGGAGGCTGTCGCAACTGGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA