1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaacaactcaaactgttcttcttagtccttgcaagagagatgcttcattcctagcttaattttttttatcacgctcattcttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTGCTGAAACAAATGGCACCAGAGCATCTTTTAGCCACGTCGGCCAAGTTA
species | Zea mays |
transcript | GRMZM2G571844_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCG -GGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTEST: gi|149089805|gb|EE179081.2|EE179081
genomic: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCGgtaaaacaac ... ttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTT
EST: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCG TGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTEST: gi|89106825|gb|DY577042.1|DY577042
genomic: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCGgtaaaacaac ... ttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTT
EST: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCG TGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTT
genomic: TCTCAGTCTCAGGGAAGTTTAGACAGAAGACCTGCCCTTTTTGCAATTCGgtaaaacaac ... ttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTT
agagatgcttcattcctagcttaattttttttatcacgctcattcttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTGCTGAAACAAATGGCACCAGAGCATCTTTTAGCCACGTCGGCCAAGTTA
gcttaat putative branch site (score: 10)
ttttttttatcacgct CT-rich tract
tagcttaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacaactcaaactgttcttcttagtccttgcaagagagatgcttcattcctagcttaattttttttatcacgctcattcttttttgcagTGGCACTGATGAAAGCACGAGGTCAAAGAGAATGCACATTTATGTCTCTTTGCTGAAACAAATGGCACCAGAGCATCTTTTAGCCACGTCGGCCAAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA