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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttaatctcattgtcttcatgttactttagacagttttgttgcaatttattggttaattcactcatatggccttgatgtcgtcgcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG

Basic information

species Zea mays
transcript GRMZM2G540538_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 5
gttagtttttaatctcattgtct-------------tcatgttactttagacagttttgttgca-atttattggttaattcactcatatggccttgatgtcgtcgcatactc----agGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG
||||||| | ||||||  | |||             |||||  |  | |  || |  | |   | | |   | || || | ||| |  ||| |||| | | | | ||  |||    ||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||
gttagttctaaatctctctctctctctctctctttttcatggcatctgatgcaataatatcctacagtggcttgtcaactaactaaggtggtcttgctcttgacacacgctcggttagGCTCATTACTACGAGGATGAGGCTGCTCCCACGGGCACATGTGCTGTCTGTGTTGTTGGTGGTGAAAG

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 5
gttagtttttaatctcatt---gtcttc----atgttactttagacagttttgttgcaattt---attggttaattcactcatatggccttgatgtcgtcgcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG
|| |||||||   ||  ||    ||||        || |  | |  |    | |  | ||||   ||| |||  ||   |  |  | |||   |  |    |||  ||||| ||| ||    |||||||||||||| || ||||| |||||||| || || ||||||||||| || ||
gtaagttttttcacttctttacatcttttgcagcttttccatggttatccatctctccattttagattagttgttttgttactgagacctct-taacaatccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 3'ss of exon 5
gttagttttta-atctcattgtcttcatgtta--ctttagacagtt-----ttgttgcaattta--ttggttaattcactcatatggccttgatgtcgtcgcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG
|| |||||||  || || ||   |   |   |   |||  |  |||     |   | || ||||  || |||  ||   |  |  | |||   |  |    |||  ||||| ||| ||    |||||||||||||| || ||||| |||||||| || || ||||||||||| || ||
gtaagttttttcatttctttacatcttttacagcttttccatggttatccatctctccattttagatttgttgttttgttactgagacctct-taacaatccatgatcagGTTCACTATCGTGAGGATGAGACTGCACCAACTGGTACATGTGCAGTTTGCGTTGTTGGTGGCGAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654569|gb|BM499374.1|BM499374
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|9952767|gb|BE639350.1|BE639350
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211299293|gb|FK964182.1|FK964182
EST:     CAAGTTTGGTGAGGAAATGAAGAAAAACGCTNCA-GCTGCANGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: CAAGTTTGGTGAGGAAATGAAGAAAAACGCT-CAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|213175717|gb|FM182537.1|FM182537
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211406117|gb|FK964261.1|FK964261
EST:     CAAGTTTGGTGAGGAAATGAAGAAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: CAAGTTTGGTGAGGAAATGAAGAAAAA-CGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211538004|gb|FL000878.1|FL000878
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211534999|gb|FL000868.1|FL000868
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|19272533|gb|BM888789.1|BM888789
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|111433446|gb|EE297763.1|EE297763
EST:     GAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: GAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211295007|gb|FK964152.1|FK964152
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211425413|gb|FL239286.1|FL239286
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|28931167|gb|CB334528.1|CB334528
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211297153|gb|FK964172.1|FK964172
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCT
EST: gi|71768280|gb|DR966217.1|DR966217
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211299292|gb|FK964181.1|FK964181
EST:     ACAAGNTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTAT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTAT
EST: gi|211297154|gb|FK964173.1|FK964173
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211301432|gb|FK964199.1|FK964199
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18654717|gb|BM499522.1|BM499522
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211538003|gb|FL000877.1|FL000877
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67022254|gb|CO451003.1|CO451003
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211292867|gb|FK964139.1|FK964139
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|30031919|gb|CB833770.1|CB833770
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67018775|gb|CO447524.1|CO447524
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211295014|gb|FK964159.1|FK964159
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGGTATG
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTG-TATG
EST: gi|67020661|gb|CO449410.1|CO449410
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211403574|gb|FK964250.1|FK964250
EST:     ACAAGTTTSGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211403570|gb|FK964246.1|FK964246
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|30087102|gb|CB885310.1|CB885310
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|5555550|gb|AI881501.1|AI881501
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211303575|gb|FK964215.1|FK964215
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACT
EST: gi|19351360|gb|BM895892.1|BM895892
EST:     ACAAGTTTGGTGAGGAAATGAAGACAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18649868|gb|BM498687.1|BM498687
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211401016|gb|FK964225.1|FK964225
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGC
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGC
EST: gi|211535006|gb|FL000875.1|FL000875
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211301430|gb|FK964197.1|FK964197
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGTCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|29543823|gb|CB604203.1|CB604203
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGGTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGG
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGG
EST: gi|211411224|gb|FK964285.1|FK964285
EST:     ACAAGTTTGGTGAGGAAATGNNNNNNN-CGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGT
EST: gi|67012632|gb|CO441381.1|CO441381
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18649867|gb|BM498686.1|BM498686
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|26557766|gb|CA830001.1|CA830001
EST:     ACAAGTTCGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCAC
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCAC
EST: gi|211403564|gb|FK964240.1|FK964240
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67028257|gb|CO457006.1|CO457006
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211408681|gb|FK964276.1|FK964276
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18384280|gb|BM417479.1|BM417479
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|20811213|gb|BQ295691.1|BQ295691
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211403575|gb|FK964251.1|FK964251
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211301429|gb|FK964196.1|FK964196
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|32919378|gb|CF024190.1|CF024190
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|19436637|gb|BM953047.1|BM953047
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCT
EST: gi|211295005|gb|FK964150.1|FK964150
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACAT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACAT
EST: gi|211406116|gb|FK964260.1|FK964260
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|26456972|gb|CA828555.1|CA828555
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211408679|gb|FK964274.1|FK964274
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211299298|gb|FK964187.1|FK964187
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211301441|gb|FK964208.1|FK964208
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|24773803|gb|CA409057.1|CA409057
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211401021|gb|FK964230.1|FK964230
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211403569|gb|FK964245.1|FK964245
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211403566|gb|FK964242.1|FK964242
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67024289|gb|CO453038.1|CO453038
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211295016|gb|FK964161.1|FK964161
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTNACT                         GCTCAYTTACTACGAGGATGAGACTGCTCCTACTGGCA
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCA-TTACTACGAGGATGAGACTGCTCCTACTGGCA
EST: gi|211303574|gb|FK964214.1|FK964214
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|18384281|gb|BM417480.1|BM417480
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211299303|gb|FK964192.1|FK964192
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|24961588|gb|CA483591.1|CA483591
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67028036|gb|CO456785.1|CO456785
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211406111|gb|FK964255.1|FK964255
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67022396|gb|CO451145.1|CO451145
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|67039373|gb|CO465628.1|CO465628
EST:     AGGAAATGACGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: AGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211406118|gb|FK964262.1|FK964262
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
EST: gi|211535002|gb|FL000871.1|FL000871
EST:     ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACT                         GCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT
genomic: ACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTACTgttagttttt ... gcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcaatttattggttaattcactcatatggccttgatgtcgtcgcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG
     aatttattggttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtttttaatctcattgtcttcatgttactttagacagttttgttgcaatttattggttaattcactcatatggccttgatgtcgtcgcatactcagGCTCATTACTACGAGGATGAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG