1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtttgcttgtccttcctgtgtttactgtcttaagaatgccagttgtaacaacttcaacattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATGGATATGCAG
species | Zea mays |
transcript | GRMZM2G520535_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|71442479|gb|DR823529.1|DR823529
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|31360260|gb|CD444617.1|CD444617
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTEST: gi|60355536|gb|DN222509.1|DN222509
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|211251396|gb|FL479077.1|FL479077
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|211039974|gb|FL073405.1|FL073405
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|149014492|gb|EE044118.2|EE044118
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|71320428|gb|DR796958.1|DR796958
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|148951226|gb|EC896920.2|EC896920
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|76019346|gb|DT946516.1|DT946516
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|60399600|gb|DN232411.1|DN232411
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|71328190|gb|DR800733.1|DR800733
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|71442480|gb|DR823530.1|DR823530
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|31353117|gb|CD437474.1|CD437474
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|78180250|gb|DV550623.1|DV550623
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|76287083|gb|DV026651.1|DV026651
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|71320427|gb|DR796957.1|DR796957
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|32866418|gb|CF006100.1|CF006100
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: CTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATEST: gi|74236045|gb|DT643959.1|DT643959
genomic: CTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
EST: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAG GGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
genomic: ACCTCTCTAATGTTGAGAAGGGTGGAGAGACCATCTTCCCCAATGCAGAGgtagtttgct ... cattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAAT
ttcctgtgtttactgtcttaagaatgccagttgtaacaacttcaacattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATGGATATGCAG
ttgtaac putative branch site (score: 182)
ttaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttgcttgtccttcctgtgtttactgtcttaagaatgccagttgtaacaacttcaacattcaatagGGGAAGCTATTACAACCGAAGGACAACACTTGGTCTGATTGTGCAAGAAATGGATATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
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