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gtgagtacagtcttttcttttatattgtagtttttcgtctattaccttctattggcagtcaataccttttttgagttatgtttgcgtaatttatctttatcatgtttaagtttcagTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
species | Zea mays |
transcript | GRMZM2G484880_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|32865668|gb|CF005350.1|CF005350
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|31997934|gb|CD661839.1|CD661839
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGATTEST: gi|93284203|gb|EB676467.1|EB676467
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGATT
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAAAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCCTGGGEST: gi|71434326|gb|DR815376.1|DR815376
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAAGAAACGTAAAAGTCCAGCTTGGGACTGAGEST: gi|6031476|gb|AW076378.1|AW076378
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAA-GAAACGTAAAAGTC-AGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|211058547|gb|FK994412.1|FK994412
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|32855367|gb|CD995048.1|CD995048
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|32913308|gb|CF018120.1|CF018120
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGCGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|76912438|gb|DV164732.1|DV164732
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|26456042|gb|CA827625.1|CA827625
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|71331879|gb|DR802817.1|DR802817
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAGEST: gi|71438521|gb|DR819571.1|DR819571
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagT----G--AAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATTTCAEST: gi|71438521|gb|DR819571.1|DR819571
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAG--TC---TCAgtgagtacag ... taagtt
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATTTCAEST: gi|211058545|gb|FK994410.1|FK994410
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAG--TC---TCAgtgagtacag ... taagtt
EST: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA TGAAGGGGAAGAAACGTA
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... taagtttcagTGAAGGGGAAGAAACGTA
ataccttttttgagttatgtttgcgtaatttatctttatcatgtttaagtttcagTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
taatttatctttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacagtcttttcttttatattgtagtttttcgtctattaccttctattggcagtcaataccttttttgagttatgtttgcgtaatttatctttatcatgtttaagtttcagTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT