Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgtttctgactttctcgtagctggaataaaaatcagaattacatggaatcatgtgattaatgaagattttgctcctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG

Basic information

species Zea mays
transcript GRMZM2G477146_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477146_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 5
gtatgtatgtttctg---------actttctcgtagctggaataaaaatcagaat-----tacatggaatcatgtgattaatgaagattttgctcctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG
||||| ||  ||||          | ||| |  ||   | ||| |    || | |     ||| |||||| ||  |||| |||||| |||| |||  |||| ||||||||||||||| ||||| |||||||| |||||||| |||||| |||| ||||| || || |||||||| || |
gtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattata-gatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106037|gb|DV524455.1|DV524455
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
EST: gi|67033412|gb|CO462161.1|CO462161
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
EST: gi|76918522|gb|DV167332.1|DV167332
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcagaattacatggaatcatgtgattaatgaagattttgctcctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG
                         gattaat  putative branch site (score: 3)
                                     ttttgctcctctttcc  putative PPT
                          attaatgaagatttt  TA-rich tract