Sequence
atgc intronic sequence ATGC exonic sequencegtagctaccagtgacatcattaggtcttcttaatgatggcatgttgttattatgccatatttttggcattgtaatgatttttcttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os09g14670.1 (Oryza sativa), 3'ss of exon 6
gtagctaccagtgacatcatt--aggtcttcttaatgatggcatgttgttattatgccatatttttggca-----------ttgtaatgatttttcttc------atttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
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----gtac-agttacagcattttgggcttaactaatgatg-taggttgctacaagaggccatttttggaaaaaaaaaaagattctaattgttgtttttttgttgaatcttggatgcagAGTTTTGGAAGAAGGTTCCTCTGAATGAACCATACCGGGTGATACTGAGTGATGTGAGAGATAAGCTTTACAATACACGTGAACGATCACGGGAGTTGTT
upper sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G36670.1 (Glycine max), 3'ss of exon 7
gtagctaccagtgacatcattaggt-cttcttaatgatggcatgttgttattatgccatatttttggcattgtaatgatttttc--ttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
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tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagtt--cactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT
upper sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G33820.1 (Glycine max), 3'ss of exon 6
gtagctaccagtgacatcattaggtcttcttaatgatggcatgttgttattatgccatattt---ttggcattgtaatgatttttcttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
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gtatgtcacagatacatttgaaatctttattggtaatga-atttggtgagtaaatttcaattgatcttgaatgtccgtgtaatgaattcttaattgctgcagAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttattatgccatatttttggcattgtaatgatttttcttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
tttttcttcatttcta CT-rich tract
attgtaatgattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagctaccagtgacatcattaggtcttcttaatgatggcatgttgttattatgccatatttttggcattgtaatgatttttcttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT