1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAGTCCTG
species | Zea mays |
transcript | GRMZM2G472625_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATAATGTGCCAGGAGTCTGCCATAGGGATGTAAAGTCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|6695759|gb|AW288837.1|AW288837
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|13198123|gb|BG354164.1|BG354164
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|20811237|gb|BQ295715.1|BQ295715
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: ATAATGTACCCGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAEST: gi|6587591|gb|AW244909.1|AW244909
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAA
EST: CCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|211467509|gb|FL214418.1|FL214418
genomic: CCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: TGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|6696036|gb|AW289144.1|AW289144
genomic: TGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAEST: gi|9825069|gb|BE575271.1|BE575271
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
tttctttgatttggtaactagttctgagttggtctgatccttctttgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAGTCCTG
tctgatccttcttt CT-rich tract
tttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT