Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTCATCGATCCGAGGCTGGAGACCGACTACGACGCGCACGACATGGCGCGGC

Basic information

species Zea mays
transcript GRMZM2G470499_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 3'ss of exon 6
gtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgc-tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTCATCGATCCGAGGCTGGAGACCGACTACGACGCGCACGACATGGCGCGGC
                                                                                            |    |  |||      |  |  ||  || |     |  |  |||  |||  ||    |  | ||      |  || ||  |   |||||||| || ||  |||||   ||||||||||||||||| |||| ||| || ||  | || ||||||||||||| | ||||||||||| ||||||||| |||||
--------------------------------------------------------------------------------------------gtgagtgggcttccgagtcttgaaccgaacacgtagatttccatttgcca--cggccggtgaaagtagtcatctctgtgtgtgtccaacagGCGAGACCCCTGCTGGTGAGAGCTGTGGAGGAGGAGAACTTCGAGGAGCTGGTTGACCCGAGGCTGGAGAACAACTACGACGCGTACGACATGGGGCGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149205694|gb|ES701290.1|ES701290
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148972876|gb|EE023878.2|EE023878
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71436076|gb|DR817126.1|DR817126
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71300889|gb|DR786474.1|DR786474
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71303236|gb|DR787720.1|DR787720
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148950563|gb|EC896143.2|EC896143
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|78112448|gb|DV530842.1|DV530842
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148952545|gb|EC898375.2|EC898375
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|88750189|gb|DY534330.1|DY534330
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|86468915|gb|DY235285.1|DY235285
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148935711|gb|EC879754.2|EC879754
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71758981|gb|DR956918.1|DR956918
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149012053|gb|EE042471.2|EE042471
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149111118|gb|EE294614.2|EE294614
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|74233576|gb|DT641490.1|DT641490
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|37422946|gb|CF649190.1|CF649190
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|110215668|gb|EC897566.1|EC897566
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148952461|gb|EC898287.2|EC898287
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148978505|gb|EE026185.2|EE026185
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|86467237|gb|DY233607.1|DY233607
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|101401539|gb|EB822449.1|EB822449
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|29947640|gb|CB816761.1|CB816761
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148967069|gb|EE018230.2|EE018230
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148959617|gb|EE010908.2|EE010908
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148975404|gb|EE025705.2|EE025705
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|33466391|gb|CF243440.1|CF243440
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71315688|gb|DR794465.1|DR794465
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148964344|gb|EE015510.2|EE015510
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149104429|gb|EE289873.2|EE289873
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|88757256|gb|DY541397.1|DY541397
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|101384403|gb|EB814246.1|EB814246
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|93017598|gb|EB643118.1|EB643118
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148963689|gb|EE014753.2|EE014753
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACTTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71316884|gb|DR795129.1|DR795129
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|89249349|gb|DY621135.1|DY621135
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71303563|gb|DR787891.1|DR787891
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|50330456|gb|CO525582.1|CO525582
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71430039|gb|DR811089.1|DR811089
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|78090522|gb|DV518896.1|DV518896
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GC----C-ATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|93284475|gb|EB676739.1|EB676739
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149095899|gb|EE181560.2|EE181560
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71420918|gb|DR805233.1|DR805233
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148972018|gb|EE022845.2|EE022845
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|50331964|gb|CO527090.1|CO527090
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|91052445|gb|EB162863.1|EB162863
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71311557|gb|DR792145.1|DR792145
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149047014|gb|EE048127.2|EE048127
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148963688|gb|EE014752.2|EE014752
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|94477154|gb|EB706112.1|EB706112
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71763595|gb|DR961532.1|DR961532
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71306820|gb|DR789567.1|DR789567
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTCATCGATCCGAGGCTGGAGACCGACTACGACGCGCACGACATGGCGCGGC
                                    ttcctctgctcctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTCATCGATCCGAGGCTGGAGACCGACTACGACGCGCACGACATGGCGCGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA