Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgacatttagaagttcttctgtcattttcgtaatggagggcatatgaccttttcttgttcttggcagACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACA

Basic information

species Zea mays
transcript GRMZM2G470438_T06
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470438_T06 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 3'ss of exon 5
gtaagatgacatttagaagttcttctgtcattttcgtaatggagggcatatgaccttttcttgttcttggcagACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACA
||||||||   |  | | ||| | |||    |||| | |   | | ||| |||  || | |  |  |||||||||||||||||||||||||||| |||| |||| ||   ||||||||||||||||||  |||||||||||| |||
gtaagatgcactcgacatgttgtactgattctttcattacaaacgtcatctgagattatttcttgtttggcagACGTGGTCATTTGTTTGATTACTCATCTGCTGTTGTGATCTATGAAATGTGTGTTGAAGAACCAATGGCGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86467513|gb|DY233883.1|DY233883
EST:     ATAAATTGTACTCATACTTCAGATGAAGGCACTGCATCTTTTGGTTGGAT                         ACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATTTATGAAATGTG
genomic: ATAAATTGTACTCATACTTCAGATGAAGGCACTGCATCTTTTGGTTGGATgtaagatgac ... ttcttggcagACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttctgtcattttcgtaatggagggcatatgaccttttcttgttcttggcagACGTGGTCATTTGTTTGATTATTCATGTGCTATTAGTATCTATGAAATGTGTGTTTCAGAACCAATGGCAACA
                                   ccttttcttgttctt  CT-rich tract
         tcatttt  TA-rich tract