1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agtaatattgccaacttttgagttcatttgtcttcttgaaacataatctttttcttttttaataatgaaacaaacttacgattttttgggaaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAAATGGGGTGAGTTGACTCTTAAAGTTGCTGCACTTACTGAATATATAAAGGATGATCTGGTTGCTTTGCTC
species | Zea mays |
transcript | GRMZM2G470438_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTT GGTGAGGCATTGGTGATGGGTTATGATGAAEST: gi|71327908|gb|DR800590.1|DR800590
genomic: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagat ... aaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAA
EST: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTT GGTGAGGCATTGGTGATGGGTTATGATGAAATGGGGTGAGTTGACTCTTAA
genomic: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagat ... aaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAAATGGGGTGAGTTGACTCTTAA
atctttttcttttttaataatgaaacaaacttacgattttttgggaaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAAATGGGGTGAGTTGACTCTTAAAGTTGCTGCACTTACTGAATATATAAAGGATGATCTGGTTGCTTTGCTC
aacttac putative branch site (score: 14)
tttcttttttaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaatattgccaacttttgagttcatttgtcttcttgaaacataatctttttcttttttaataatgaaacaaacttacgattttttgggaaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAAATGGGGTGAGTTGACTCTTAAAGTTGCTGCACTTACTGAATATATAAAGGATGATCTGGTTGCTTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG