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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttcttaactatacatcacttgttctgcaacatgtactttccacatatccttccttgccggttcatctgaatgaccaatttcttctgatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAAATGAATACAATTTGATGTTGTGAGCTCTCATGTGTACCAGGTATCTATT

Basic information

species Zea mays
transcript GRMZM2G468693_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78022286|gb|DV490673.1|DV490673
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCAGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
EST: gi|74237926|gb|DT645840.1|DT645840
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
EST: gi|211207814|gb|FL427954.1|FL427954
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
EST: gi|211300563|gb|FL370635.1|FL370635
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGYGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA
EST: gi|211529896|gb|FL379285.1|FL379285
EST:     CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGC                         GAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAAYAGGAA
genomic: CTTCCTGAGGGGAAAGGCGTTATAAAGTGTGATACATCTGAAGATTTAGCgtaagttcag ... gatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatatccttccttgccggttcatctgaatgaccaatttcttctgatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAAATGAATACAATTTGATGTTGTGAGCTCTCATGTGTACCAGGTATCTATT
                                         ttctgat  putative branch site (score: 3)
                                     tttcttctg  CT-rich tract
                                   aatttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattttcttaactatacatcacttgttctgcaacatgtactttccacatatccttccttgccggttcatctgaatgaccaatttcttctgatgtttcagGAGACTATACGGGGAAGAGGACTACTATAATTTTGTTGTTGCAAATAGGAAATGAATACAATTTGATGTTGTGAGCTCTCATGTGTACCAGGTATCTATT

- - - - - - - - - - - - -gttctgc
- - - - - - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg