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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagcataaataattactgttcattcttgctgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAGTGAGAGAGGAGGATAGATTTTATTACCCTCACAATTTAGATTTCCGTGGGTGTGCATACCTTATGCATCCTCATTTGAGTCACCTAG

Basic information

species Zea mays
transcript GRMZM2G467606_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467606_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 8
gtatgcagcataaataattactgttcattcttgctgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAGTGAGAGAGGAGGATAGATTTTATTACCCTCACAATTTAGATTTCCGTGGGTGTGCATACCTTATGCATCCTCATTTGAGTCACCTAG
||| |   |||||||  | | | ||  | | | |  ||||| |    | |||||| | |  |  |   ||  ||  | ||              |||||||||||||||||| ||| |||||||||||||| |||||||||| || || ||| | ||||| |||||  ||||||||| ||||||| | ||| | || |||||||
gtacgtgacataaattttcattctttgtaccttc--agatatttc--ttcagttttttttttcgtatgtta-tgacactac----------cacctgtaaacagGTTGCTCGGAAAATGAGAGAGGAGGATGGATTTTATTATCCCCATAATCTTGATTTTCGTGGCCGTGCATACCCTATGCATGCACATCTAAGCCACCTAG

upper sequence: GRMZM2G467606_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 3
---gtatgcagcataaataa---ttactgttcattcttgctgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAGTGAGAGAGGAGGATAGATTTTATTACCCTCACAATTTAGATTTCCGTGGGTGTGCATACCTTATGCATCCTCATTTGAGTCACCTAG
         |   | ||  |   ||||  ||   || || | | ||||| |       || |   | |     ||   |  ||  | |    ||| |       |||||||| || || ||| ||| ||| |||||  | |||||||| ||||||||| | |||||||||||  | ||||| | ||||||||||||||||| |||  |||
taatcgcataatctgaactaagtttaccatta--tcatgttca-atactatcccatgtttcactagttgagcaataatttaaagaaaatacattctt-------aaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCTCACAATCTTGATTTCCGTGGTAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAGTGAGAGAGGAGGATAGATTTTATTACCCTCACAATTTAGATTTCCGTGGGTGTGCATACCTTATGCATCCTCATTTGAGTCACCTAG
                               tacttgttccttttct  CT-rich tract
                          aattatactt  TA-rich tract