Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttatttgtagtagctctgtagtgccattttcggtttcttgtataatgagtttcaccaaatttacaacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG

Basic information

species Zea mays
transcript GRMZM2G467086_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g01420.1 (Oryza sativa), 3'ss of exon 5
----------cacttatttgtagtagctctgtagtg-----ccattttcggtttcttgtataatgagtttcaccaaatttacaacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
          |    ||    | ||  |||| | |       || ||||  ||  |  || ||   | || || ||||||| |||||                |  ||   |||||| |||||||||||||||||  |||||||||| |||||||| ||||| || |||||||||||||||||||| ||||||||  |||||||||
gctgtggtgtctgcaatgcacaatatgtctggaataactattcactttctcttcttcataaaacatggtttactaaatttagaacatg---------------atgatatgtcagGTGGAGCTTAAGGAAGGCCCCTTGGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAG

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g01430.2 (Oryza sativa), 3'ss of exon 4
cacttatttgtagtagctctgtagtgccattttcggtttcttgtataatgagtttcaccaaatttacaacattttacaaa---caacatct-acaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
    ||  ||| ||  ||     |  | || |  ||  |      | |     |   |   ||  |  |   ||||| ||    |  | || |  ||   |||||| |||||||||||||||||  | |||||||| |||||||| ||||| || |||||||||||||||||| | ||||||||  |||||||||
----tagctgtggtgtctgcaatgcacaatgtctggaataactattcactctctcttcttcataaaacatggtttactaaatttagaacctgatgatatgtcagGTGGAGCTTAAGGAAGGCCCCTTAGAACAGTTTACACATGAAATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAG

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 5
lower sequence: AT1G25260.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------------------------cacttatttgtagtagctctgtagtgccattttcggtttcttgtataatgagtttcaccaaatttac----aacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
                                                           |||   | |  |    || |  | |  | || | | | |   | | |  |||||   |  ||||     |  | | ||     | || |||  | |  | ||||||| || |||||||| ||||| ||||||||||||||||||||||| ||| |||| || ||||  | | | || || ||  | |||||||
gtttgtgaacagaacttgtgccatctctatatactgttgtttctagataaataaataagcttgactatgatcaggctctgcttc--tctttgttatttaaaaaactttgtttcgttacttttatcttaattactatattggtaccaccta--aatgattagGTTGAACTGAAGGAAGGTCCTCTAGAACAGTTCACACATGAGATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAG

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv12s0034g01000.t01 (Vitis vinifera), 3'ss of exon 5
cacttatttgtagtagctctgtagtgccattttcg-gtttcttgtataatgagtttcaccaaattta-caacattt--tacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
   | |     || |  |||||  |    |||||   || | | ||| ||   | |||   |   || ||| ||||  | ||   ||    ||  ||   |||||| |||||||| ||||| ||||| || |||||||||||||||||||| || || ||||||||||||||  | || ||||| ||||||||||
---taaaacacag-aaatctgtgatcatcttttcatattgcatatatgattcatctcatatatcctaacaaaatttcttgcattgaatccttaatatgtttcagGTGGAGCTTAAAGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCTTCCTACGCAAGCAAGGGATGCCGGTTCGGTTGAACAAAG

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 5
lower sequence: EFJ38547 (Selaginella moellendorffii), 3'ss of exon 4
cacttatttgtagtagctctgtagtgccattttcggtttcttgtataatgagtttcaccaaatttacaacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
                              |    ||      |    |   |||  |    ||| |  | | |  |   ||   |     | | | ||||| || || || |||||||| ||||| || ||||| || ||||||||||||||||| || ||||||||| | || |||||  | |||| ||
-----------------------------gtgcgtgtagacaatgcttttgcttttgcgtggttttcttcgtgtagct--cactgtgagtgactacacagGTGGAACTCAACGAAGGCCCACTGGAGCAATTCACGCACGAGATGGAGCCATTTCTGCGAAAGCAAGGAATGCCTGTTCGTCTAAACAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21891514|gb|BQ744727.1|BQ744727
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|26559664|gb|CA831899.1|CA831899
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|149010282|gb|EE042111.2|EE042111
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|60347115|gb|DN214088.1|DN214088
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|26558517|gb|CA830752.1|CA830752
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGGCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|22133771|gb|BQ833893.1|BQ833893
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|67015514|gb|CO444263.1|CO444263
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|20802773|gb|BQ293823.1|BQ293823
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|71441332|gb|DR822382.1|DR822382
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|37397689|gb|CF636152.1|CF636152
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCTTCTGGAACAGTTCACACATGAGATGGTGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|40337158|gb|CK371228.1|CK371228
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGTGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|5499042|gb|AI854909.1|AI854909
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|30088302|gb|CB886507.1|CB886507
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|71434423|gb|DR815473.1|DR815473
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|71441331|gb|DR822381.1|DR822381
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|71447892|gb|DR828942.1|DR828942
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|5439234|gb|AI820155.1|AI820155
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|21828674|gb|BQ703358.1|BQ703358
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCNCNCATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|5895917|gb|AW037163.1|AW037163
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCTCTAC-TGAGATGGAGCC
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCAC-ACATGAGATGGAGCC
EST: gi|71322698|gb|DR798027.1|DR798027
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|78544743|gb|DV622241.1|DV622241
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|211520202|gb|FL010171.1|FL010171
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|29130506|gb|CB381210.1|CB381210
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|22819557|gb|BU499647.1|BU499647
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|22545521|gb|BU097880.1|BU097880
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|67020213|gb|CO448962.1|CO448962
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|120480859|gb|EH211066.1|EH211066
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGYTATCGATACG                         GTTGAGCTTTARGGAAGGCCCTCTGGAACAGTT-ACACATGAGATGGAGCC
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAA-GGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCC
EST: gi|101383868|gb|EB813989.1|EB813989
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|60399755|gb|DN232565.1|DN232565
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|20301485|gb|BQ164428.1|BQ164428
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|148969444|gb|EE020248.2|EE020248
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|78026443|gb|DV494830.1|DV494830
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|5398724|gb|AI812189.1|AI812189
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|28987333|gb|CB351581.1|CB351581
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|5108236|gb|AI739949.1|AI739949
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|149015123|gb|EE044887.2|EE044887
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|87156128|gb|DY400917.1|DY400917
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|22549184|gb|BU101385.1|BU101385
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|89761969|gb|DY689774.1|DY689774
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|21810013|gb|BQ668331.1|BQ668331
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGNCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|78119879|gb|DV538263.1|DV538263
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
EST: gi|45568458|gb|CK986074.1|CK986074
EST:     AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACG                         GTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA
genomic: AATTCGAGGAGCATGATTTTGCAAGGACAGGAAGTACTGCTATCGATACGgtattctagt ... aattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgagtttcaccaaatttacaacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG
                                               ttcctc  CT-rich tract
              aaatttacaacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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cacttatttgtagtagctctgtagtgccattttcggtttcttgtataatgagtttcaccaaatttacaacattttacaaacaacatctacaattcctcagGTTGAGCTTAAGGAAGGCCCTCTGGAACAGTTCACACATGAGATGGAGCCATTTCTACGCAAGCAAGGACTTCCAGTTCGCTTGAACAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - tgccatt
- - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca