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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcaggcctttgttactgaataactattggtacatatgaatatatgaactgcacaataaagaaagaggttatcttcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG

Basic information

species Zea mays
transcript GRMZM2G464885_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464885_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g40020.2 (Oryza sativa), 3'ss of exon 7
---gtatctcaggcctttgttac-tgaataactattggt-acatatga-atatatgaactgcacaataaagaaagaggttatcttct----tgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG
   ||| || | ||||   || | |   |||    || | | ||||   |||| | || |  |     || ||   ||  | | |      ||||||||| ||||| ||||| ||||| || |||||||| |||||||||||  | |  || ||||| || ||| ||||||||||| |   ||
gtagtagcttatgcctaaatttcgtatgtaatctctgatcatatatattatatgtcaaatcaatggagaataaccgggaaaccgttgagtatgaacagGAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762078|gb|DY689837.1|DY689837
EST:     CCCAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAGG                         GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
genomic: CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAGgtatctcagg ... tcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
EST: gi|71448014|gb|DR829064.1|DR829064
EST:     CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAG                         GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
genomic: CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAGgtatctcagg ... tcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
EST: gi|71433931|gb|DR814981.1|DR814981
EST:     CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAG                         GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
genomic: CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAGgtatctcagg ... tcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
EST: gi|60341574|gb|DN208547.1|DN208547
EST:     CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAG                         GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
genomic: CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAGgtatctcagg ... tcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
EST: gi|71433932|gb|DR814982.1|DR814982
EST:     CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAG                         GAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG
genomic: CCAAGCTTGCCAATATTCTTCATTCTAATGAACTGTCTCGAATACTCAAGgtatctcagg ... tcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacatatgaatatatgaactgcacaataaagaaagaggttatcttcttgaacagGAGGATGGAGTGAATATTTCAGCCAATGCAGTTCATCCTGGTGTCATCATGACTAACCTTTTTAGGAACAGGACTATTGTCTCTG
                                       ttatcttctt  CT-rich tract
     tatgaatatatgaa  TA-rich tract