1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattctcatagtcatccggtgctagcatgagcgaagcttagttcagtaacagctttgtctacttgcagTCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGACCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCT
species | Zea mays |
transcript | GRMZM2G463267_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCTACTTGAAAAGATCAACATGCTTTGCTTGATGGAAATCATTTTCAG TCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGACEST: gi|71761711|gb|DR959648.1|DR959648
genomic: AATCTACTTGAAAAGATCAACATGCTTTGCTTGATGGAAATCATTTTCAGgtaattctca ... ctacttgcagTCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGAC
EST: AATCTACTTGAAAAGATCAACATGCTTTGCTTGATGGAAATCATTTTCAG TCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGAC
genomic: AATCTACTTGAAAAGATCAACATGCTTTGCTTGATGGAAATCATTTTCAGgtaattctca ... ctacttgcagTCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGAC
atccggtgctagcatgagcgaagcttagttcagtaacagctttgtctacttgcagTCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGACCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCT
cagtaac putative branch site (score: 2)
ctttgtct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctcatagtcatccggtgctagcatgagcgaagcttagttcagtaacagctttgtctacttgcagTCGATCATCTGAAAACCGCACGATCCCAATGCGGGATATAGCAGAACAGACCAAGCTCCCTGTTGAAGATGTGGAGTATCTATTAATGAAGAGCCTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA