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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaagttcaccaatgaattctagtgtgcaatcgattatttgtccgctgaaaatggcaatttgtgatctgcaatagggaattagatttaagacattaacacatcagtaattgtaatatgcttggctctgccacttcatttgagtcctatacaactgacgacatgtaaatccaaataattcttgtagGATTCTGTAGTGACTGTAGACAGGTATGCAGCTGCTGAGGGTTTCTATAAACTAGCTATGGCCTATGCGCCCGTTCCAGATCTTCACATTATGTGGTTGC

Basic information

species Zea mays
transcript GRMZM2G462803_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462803_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g21080.1 (Oryza sativa), 3'ss of exon 9
gtaagcaaagttcaccaatgaattctagtgtgcaatcgattatttgtccgctgaaaatggcaatttgtgatctgcaatagggaattagatttaagacattaacacatcagtaattgtaatatgcttggctctgccacttcatttgagtcctatacaactgacgacatgtaaatccaaataattcttgtagGATTCTGTAGTGACTGTAGACAGGTATGCAGCTGCTGAGGGTTTCTATAAACTAGCTATGGCCTATGCGCCCGTTCCAGATCTTCACATTATGTGGTTGC
                                                                                      | | || | |||   | | |||||  || |  || |  ||   | ||    ||| |  || |   ||    || |     | ||  | | | |  |  ||| |||  |||| | ||||| | |||||||| || |||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| || |||||||| |
------------------------------------------------------------------------------------gcacacttgaaacacctaaatatcagctat-gctatttctttccatttgtgttttcgt--gaattgaattt--ctaaaactctatattttcta-tgttctttgcagGGCTCTGAAATGACTCTGGACAGGTACGCTGCTGCTGAGGGTTTCTATAAGCTAGCAATGGCCTACGCGCCTGTGCCAGATCTTCATATAATGTGGTTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012408|gb|DT939578.1|DT939578
EST:     CTAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTGGAACACGCCCTCTTG                         GATTCTGTAGTGACTGTAGACAGGTATGCAGCTGCTGAGGGTTTCTATAAA
genomic: CTAAATGTCTAGTCCAGGCCCTTGATGCTGGTCTGGAACACGCCCTCTTGgtaagcaaag ... attcttgtagGATTCTGTAGTGACTGTAGACAGGTATGCAGCTGCTGAGGGTTTCTATAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcatttgagtcctatacaactgacgacatgtaaatccaaataattcttgtagGATTCTGTAGTGACTGTAGACAGGTATGCAGCTGCTGAGGGTTTCTATAAACTAGCTATGGCCTATGCGCCCGTTCCAGATCTTCACATTATGTGGTTGC
                    aactgac  putative branch site (score: 2)
                                              ttcttgt  putative PPT
                                 taaatccaaataatt  TA-rich tract