1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagtatgcttggtgccggtacgcatctcaatatctctgtctactcacatttttgataacatgctttgccttctgaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACATTTGTATACAATTCTTTCATTCAAAATAGTGGAAGCTACAGCAATCCTC
species | Zea mays |
transcript | GRMZM2G461948_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAG GTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACAEST: gi|211437327|gb|FK968974.1|FK968974
genomic: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAGgtagtatgct ... gaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACA
EST: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAG GTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACAEST: gi|211437329|gb|FK968976.1|FK968976
genomic: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAGgtagtatgct ... gaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACA
EST: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAG GTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACA
genomic: ATGGACACCTATTACTTGTGCTAGATGATATCGAGTTTTATGAAAAGCAGgtagtatgct ... gaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACA
aatatctctgtctactcacatttttgataacatgctttgccttctgaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACATTTGTATACAATTCTTTCATTCAAAATAGTGGAAGCTACAGCAATCCTC
ccttctg CT-rich tract
atttttgataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtatgcttggtgccggtacgcatctcaatatctctgtctactcacatttttgataacatgctttgccttctgaattcacagGTTCCTTTTACTTTAGAGCAGCAGCGGAAGATTGCATCAGCACTTAATACATTTGTATACAATTCTTTCATTCAAAATAGTGGAAGCTACAGCAATCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG