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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcttatgattgaaatgctaggctaccagaataacattctccatagtccctatttgtactatcgaggttactaatatttcttgtttgtagttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGATCCATGAATTTCTTTATTCTTTGTTAGACTAGTCACAGTCCAAGGGAGTC

Basic information

species Zea mays
transcript GRMZM2G459642_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60399844|gb|DN232654.1|DN232654
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         ATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
EST: gi|60353564|gb|DN220537.1|DN220537
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAG                  
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: gi|211383655|gb|FL455017.1|FL455017
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAMCCTGAAGATGTTCCGAACTAAGTTTTGCAG                  
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|33091264|gb|CF051258.1|CF051258
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         T
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: gi|4827750|gb|AI668442.1|AI668442
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAG                  
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: gi|6539112|gb|AW225251.1|AW225251
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG                         ATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
EST: gi|60401545|gb|DN234352.1|DN234352
EST:     TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAG                  
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtccctatttgtactatcgaggttactaatatttcttgtttgtagttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGATCCATGAATTTCTTTATTCTTTGTTAGACTAGTCACAGTCCAAGGGAGTC
                         tactaat  putative branch site (score: 1)
                        ttactaatatttctt  TA-rich tract