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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtccattcctgctaacttttttgtaaaatatttctccaaagattacaatctgattaaactagcttaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcagATCCTTGAACCTTGCCAGTCAAGTATCGCATATCGACCTCCAAATCCCTGGACCATGGGAATTCTAAGTCTACTTGCTGAAATTTATAATCTTCCAAACC

Basic information

species Zea mays
transcript GRMZM2G457909_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G457909_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g01240.1 (Oryza sativa), 3'ss of exon 20
gtgtccattcctgctaacttttttgtaaaatatttctccaaagattacaatctgattaaactagcttaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcagATCCTTGAACCTTGCCAGTCAAGTATCGCATATCGACCTCCAAATCCCTGGACCATGGGAATTCTAAGTCTACTTGCTGAAATTTATAATCTTCCAAACC
                                                  |  ||||   || |  |  | | ||     |     |||  ||           |||| |||| |   ||| |||||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||||| |||||||
------------------------------------------------gtttggattgttctcgtctctatagaacatgtt-----actcaggcatgcttattatcataaccagtaattgcactgcagATTCTTGAACCTTGCCGGTCAAGTATAGCATACCGTCCTCCAAATCCCTGGACAATGGGGATTCTTAGTCTGCTTGCTGAGATCTATAATCTACCAAACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcagATCCTTGAACCTTGCCAGTCAAGTATCGCATATCGACCTCCAAATCCCTGGACCATGGGAATTCTAAGTCTACTTGCTGAAATTTATAATCTTCCAAACC
        tattaac  putative branch site (score: 1)
                                            ctgctct  putative PPT
     aattattaactt  TA-rich tract