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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgtatctcctttttgtcctagagtagtagtcgactcttcttggatttcacattgttctacaatagggaaagaaaataaatgttccttgttgctatttagGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCAT

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 4
acgtatctcct-ttttgtcctagagtagtagtcgactcttc-ttggatttcacattgttctacaatagggaaagaaaataaatgttccttgttgctatttagGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCAT
  |  | | ||    || | |     | |  |  | ||||| ||  | |    | |||  |  | |  |         |    | |  |   |    | |||||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| || ||||  || ||||||||  ||||| |||
ttgggttttctaccctgacttcattgatttttttattcttccttatactaattactgtatt-tattccgtcctttttctggccgattgtctatatc-tatagGTGGTTTACAATGCAAATAAACTTGCTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTCAAGTATGAAAGAAATCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105551|gb|DV523969.1|DV523969
EST:     TGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAG                         GTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAG
genomic: TGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctac ... tgctatttagGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacattgttctacaatagggaaagaaaataaatgttccttgttgctatttagGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAGATGCGAAATTGGCTTGACTATTACCTACTAAAGTATGAGCGAAATTCAT
                                     ttccttgtt  CT-rich tract
                       aaagaaaataaatgtt  TA-rich tract