1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaactgtgtttagctgttttattttctgattccattttgaaatatgtatgttgacaattttgtttacccaattctgcaatcaaacagTTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG
species | Zea mays |
transcript | GRMZM2G452633_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATATGGTTTCACCTTCAAGTGTGATGAGAGATCTGAAAAAAGACGAGAG TTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCEST: gi|32934224|gb|CF039036.1|CF039036
genomic: CATATGGTTTCACCTTCAAGTGTGATGAGAGATCTGAAAAAAGACGAGAGgtaaactgtg ... aatcaaacagTTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGC
EST: CATATGGTTTCACCTTCAAGTGTGATGAGAGATCTGAAAAAAGACGAGAG TTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGC
genomic: CATATGGTTTCACCTTCAAGTGTGATGAGAGATCTGAAAAAAGACGAGAGgtaaactgtg ... aatcaaacagTTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGC
cattttgaaatatgtatgttgacaattttgtttacccaattctgcaatcaaacagTTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG
tgttgac putative branch site (score: 3)
aattttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactgtgtttagctgttttattttctgattccattttgaaatatgtatgttgacaattttgtttacccaattctgcaatcaaacagTTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA