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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttaatgtttaattgtggagttctttgttacactgatgtcttccaattagtgccatttcctcattattaattctctgtttcccacagGTCAATGCCCAAGCTCCGAATTTTGCGTTTGTTTGGAAATCCTCTAGAGTTTCTTCCAGAAATTTTGCCACTGCATAACCTCAGGCATCTCACACTTGCA

Basic information

species Zea mays
transcript GRMZM2G451672_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 3'ss of exon 3
gttatttaat-gtttaattgtggagttctttgttacactgatgtcttccaattagtgccatttc-ctcattattaattctctgtttcccacagGTCAATGCCCAAGCTCCGAATTTTGCGTTTGTTTGGAAATCCTCTAGAGTTTCTTCCAGAAATTTTGCCACTGCATAACCTCAGGCATCTCACACTTGCA
|||||| ||| || | |  | ||  || |||  |  || | | ||||||  || |||| |||   || |||||| ||||| |||| |  ||||||||||||| ||| | ||  | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
gttattcaattgtcttacagaggcatttttttattgac-ggtttcttcctgttggtgctattaagctaattattcattctttgttccgaacagGTCAATGCCTAAGTTGCGTGTATTGCGCTTGTTTGGAAATCCTCTAGAGTTTCTCCCAGAAATTTTGCCACTGCATAACCTTAGGCATCTCACACTTGCA

upper sequence: GRMZM2G451672_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 3
gttatttaatgtttaattgtggagttctttgttacactgatgtc--ttccaattagtgccatttcctcattattaattctctgtttcccacagGTCAATGCCCAAGCTCCGAATTTTGCGTTTGTTTGGAAATCCTCTAGAGTTTCTTCCAGAAATTTTGCCACTGCATAACCTCAGGCATCTCACACTTGCA
         | |||  ||  |  |   ||   || |||  | |    ||||  || | |  |   || ||| |||     |    |    |||| | ||| |  |  | ||  || |  |  | |||||||||||||| ||||||||||| ||||||||||| || || || ||  | || ||  | ||||||
--------gtttttggtttagatgaatttgtataaactagtctagactccacatattcctctggtcttattgtta-----ccacatatggcagGGCTATGGCTGAATTACGGGTTCTTAGGCTATTTGGAAATCCTCTTGAGTTTCTTCCTGAAATTTTGCCCCTCCACAAACTTCGACACCTTTCTCTTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgtcttccaattagtgccatttcctcattattaattctctgtttcccacagGTCAATGCCCAAGCTCCGAATTTTGCGTTTGTTTGGAAATCCTCTAGAGTTTCTTCCAGAAATTTTGCCACTGCATAACCTCAGGCATCTCACACTTGCA
                                tattaat  putative branch site (score: 2)
                                      ttctctgtttcccac  CT-rich tract
                            tcattattaattct  TA-rich tract