1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatctatatgcttagtttagttcattttcatccatttttttatctgctgtttctacgacggaagcattattcaaggtgactaattaaaagctcatcgatcagtggctgaggataccatggcatgcttttgcttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCTTCAACCAGCTGCTCACCGTACCTGAGCGAGACGACTGGGAGTACAGCG
species | Zea mays |
transcript | GRMZM2G445478_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAG AAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCEST: gi|149100003|gb|EE186056.2|EE186056
genomic: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAGgtatctatat ... ttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
EST: ATGCTTCCCACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAG AAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCEST: gi|78118583|gb|DV536967.1|DV536967
genomic: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAGgtatctatat ... ttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
EST: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAG AAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCEST: gi|149015788|gb|EE045483.2|EE045483
genomic: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAGgtatctatat ... ttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
EST: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAG AAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCEST: gi|76931485|gb|DV172738.1|DV172738
genomic: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAGgtatctatat ... ttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
EST: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAG AAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
genomic: ATGCTTCCAACATGTGGAACGAAGCACTTAACAAGCGACTTGGGACTGAGgtatctatat ... ttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCC
aaagctcatcgatcagtggctgaggataccatggcatgcttttgcttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCTTCAACCAGCTGCTCACCGTACCTGAGCGAGACGACTGGGAGTACAGCG
cttttgctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctatatgcttagtttagttcattttcatccatttttttatctgctgtttctacgacggaagcattattcaaggtgactaattaaaagctcatcgatcagtggctgaggataccatggcatgcttttgcttggatgtagAAACTGGACCTCCATGGGATCATTAGGGAGACCGAGAGACGGGGCCTGTCCTTCAACCAGCTGCTCACCGTACCTGAGCGAGACGACTGGGAGTACAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT