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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagcataaataattactgttcattcttgctgagataccgtggtgcagtttatatgctattacattgttggaattatacttgttccttttctgtaaacagGTTGCTCATAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG

Basic information

species Zea mays
transcript GRMZM2G440258_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G440258_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 8
gtatgcagcataaataattactgttcattcttgctgagataccgtggtgcagtttatatgctattacattgttggaattatacttgttccttttctgtaaacagGTTGCTCATAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
||| |   |||||||  | | | ||  | | | | || ||  | |    |||||| | |  |  ||  || |   | |   ||           |||||||||||||||||  ||||||||||||||||||||||||||||| || || ||| | ||||| ||||| |||||||||||||||||| | ||| | || |||||||
gtacgtgacataaattttcattctttgtaccttcagatatttctt----cagttttttttttcgtatgttatgacactaccac-----------ctgtaaacagGTTGCTCGGAAAATGAGAGAGGAGGATGGATTTTATTATCCCCATAATCTTGATTTTCGTGGCCGTGCATACCCTATGCATGCACATCTAAGCCACCTAG

upper sequence: GRMZM2G440258_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 3
---gtatgcagcataaataa---ttactgttcattcttgctgagataccgtggtgcagtttatatgctattacattgttggaattatacttgttccttttctgtaaacagGTTGCTCATAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
         |   | ||  |   ||||  ||   || || | | ||||  |       || |   | |     ||  ||  ||  | |    ||| |       |||||||| || |  ||||||| ||| ||||| || |||||||| ||||||||| | |||||||||||  | ||||| ||||||||||||||||||| |||  |||
taatcgcataatctgaactaagtttaccatta--tcatgttca-atactatcccatgtttcactagttgagcaataatttaaagaaaatacattctt-------aaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCTCACAATCTTGATTTCCGTGGTAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG

upper sequence: GRMZM2G440258_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA06G24890.1 (Glycine max), 3'ss of exon 1
---gtatgcagcataaataattactgttcattcttgc-tgagataccgtggtgcagtttatatgctattacattgttggaattatacttgttccttttctgtaaacagGTTGCTCATAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
    |    |   | ||  |    |   |||| |  | |   ||||  |       || |   | |     ||  ||  ||  | |    ||| |       |||||||| || |  ||||||| ||| ||||| || |||||||| || |||||| | || ||||||||  | ||||| ||||||||||||||||||| |||  |||
taattgaataatctgaactaa-gtttaccattatcacattcaatactatcccatgtttcactagttgagcaataatttaaaggaaatacattctt-------aaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCACACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttatatgctattacattgttggaattatacttgttccttttctgtaaacagGTTGCTCATAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
                               tacttgttccttttct  CT-rich tract
                          aattatactt  TA-rich tract