1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggacagcttctgctactctcataatcgaagcagttttctttctctgttttcatttttctgtaccttagtatcattgcaggagttttttttcactaagatgatggtttgaatttctattgatttatttctcccccatgcacccaatatcaaactccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGAAGGAAGAGCAACAAATTAGCTGTACATCTTCAACATCTCTGCTCTCTTC
species | Zea mays |
transcript | GRMZM2G435034_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCCAGTAAATTTAATCGGTCCAAAGCTTTATGTTTGCACTAACATG GTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGAEST: gi|71421989|gb|DR805607.1|DR805607
genomic: CGTTGCCAGTAAATTTAATCGGTCCAAAGCTTTATGTTTGCACTAACATGgtatggacag ... ctccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGA
EST: CGTTGCCAGTAAATTTAATCGGTCCAAAGCTTTATGTTTGCACTAACATG GTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGAEST: gi|61236763|gb|DN586498.1|DN586498
genomic: CGTTGCCAGTAAATTTAATCGGTCCAAAGCTTTATGTTTGCACTAACATGgtatggacag ... ctccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGA
EST: TGTTTGCACTAACATG GTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGA
genomic: TGTTTGCACTAACATGgtatggacag ... ctccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGA
tgaatttctattgatttatttctcccccatgcacccaatatcaaactccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGAAGGAAGAGCAACAAATTAGCTGTACATCTTCAACATCTCTGCTCTCTTC
tattgat putative branch site (score: 17)
ctccctgc putative PPT
ttctattgatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggacagcttctgctactctcataatcgaagcagttttctttctctgttttcatttttctgtaccttagtatcattgcaggagttttttttcactaagatgatggtttgaatttctattgatttatttctcccccatgcacccaatatcaaactccctgcagGTTGATGTGGGTAAAAGACCAGTTACAGGACTCCGGTTGTTCCTTGAAGGAAGGAAGAGCAACAAATTAGCTGTACATCTTCAACATCTCTGCTCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA