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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaattgtatattttcttaactgtaaactatttttccttttatgtatattctacccttgtatactttctaaccgtttatttaacatttctgttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGA

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 3'ss of exon 5
gaaattgtatattttcttaactgtaaactatttttccttttatgtatattctacccttgtatactttctaaccgtttatttaacatttctgttgatgcagA-AAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGA------------
                                                        ||||| | |  ||||   | |   || |||| ||  || |  |    |  | | || |   | | |||   ||| |   || ||| ||||||||||||||  ||||||||||||||||||||||||||||  | || ||||||||            
------------------------------------------------------gtttgtacagtg-ctaa---tattgctagcattcct-ctgctatatttgactaatatg-atctgtttcta--taagca---gGCTCCTGTTGCTGCTGTTGTTGTAATGGCTTGCAATCGACCAGACTATTTGCAAAGGACAGTTGAATCTATCCTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285204|gb|DV024772.1|DV024772
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526749|gb|FL258558.1|FL258558
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTC
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTC
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526744|gb|FL258553.1|FL258553
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCT
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCT
EST: gi|211526751|gb|FL258560.1|FL258560
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTT
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTT
EST: gi|148986617|gb|EE030388.2|EE030388
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211529737|gb|FL258563.1|FL258563
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526745|gb|FL258554.1|FL258554
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAA
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAA
EST: gi|211529741|gb|FL258567.1|FL258567
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAA
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAA
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526748|gb|FL258557.1|FL258557
EST:     GCAAGATGAAGAACGTGCACATCTGAGGACTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGC
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGC
EST: gi|211526750|gb|FL258559.1|FL258559
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattctacccttgtatactttctaaccgtttatttaacatttctgttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTAGAGAGAACAGTTGA
                                        tttctgtt  CT-rich tract
                             tttatttaacatttct  TA-rich tract