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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattagatctgttgtgcaatttcttctgaactttttgaagttacaatatcatttgaaattataatgttctaaagaaacaaaaaaatcgatttaatggcagGAACTTGCTAGCATTATCAAACTTTCAGTGTATTCTAGTTTCAGCCTATTTGAATGTCGGAAGGTTGTTAACGGATCAAAGTCTTCAGAGGTTGGCAATG

Basic information

species Zea mays
transcript GRMZM2G423861_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 3'ss of exon 4
cattagatctgttgt-gcaatttcttctgaactttttgaagttacaatat----catttgaaattataatgttctaaagaaacaaaaaaatcgatttaatggcagGAACTTGCTAGCATTATCAAACTTTCAGTGTATTCTAGTTTCAGCCTATTTGAATGTCGGAAGGTTGTTAACGGATCAAAGTCTTCAGAGGTTGGCAATG
  ||  ||   |  |   || || || |  | |||||   ||| |  ||      ||||||| || ||| | ||||| |||||| || | |  ||  |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||
--ttgtattattcatcagaactttttgtatagtttttactgtttctgtacggtgtatttgaagttgtaa-gatctaaggaaacataacattttat--aatgacagGAACTTGCTGGCATTATCAAACTTTCAGTATATTCTAGTTTCAGCCTTTTTGAATGCCGAAAGGTTGTTAATGGATCCAAGTCTTCAGATGTTGGCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcatttgaaattataatgttctaaagaaacaaaaaaatcgatttaatggcagGAACTTGCTAGCATTATCAAACTTTCAGTGTATTCTAGTTTCAGCCTATTTGAATGTCGGAAGGTTGTTAACGGATCAAAGTCTTCAGAGGTTGGCAATG
     atttgaaattataatg  TA-rich tract