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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT

Basic information

species Zea mays
transcript GRMZM2G421857_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 3'ss of exon 5
gtagtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttc--cagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
   || |  ||   |     || ||  |  ||   ||    |    || || || |  | | | | ||     || | |   | ||  ||||||    | | ||  |   ||  | |  |||||||||||||| | ||||| |||||||||||||| |||
---gtaaagtattttgtatacttcaggggggaggggggggggttaccttttgttatcctttttcattta-gcatgcagtgcaaggcactctaaaatcatctcctattatcattatgctgcagGTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649012|gb|BM497831.1|BM497831
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32925234|gb|CF030046.1|CF030046
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211155994|gb|FL123529.1|FL123529
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32848240|gb|CD987921.1|CD987921
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32910759|gb|CF015571.1|CF015571
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541192|gb|FL123489.1|FL123489
EST:     CCTGCCCTTGACAAAGATGTATTGTGGGGAATTTCAGCCAACGAAGCTAG                         GTGGTTGCAGATGTCATCACAGG
genomic: CCTGCCCTTGACAAAGATGTATTGTGGG-AATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTG-TTGGAGATGTCATCACAGG
EST: gi|211152790|gb|FL123500.1|FL123500
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|148941860|gb|EC886839.2|EC886839
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32934325|gb|CF039137.1|CF039137
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149070206|gb|EE158608.2|EE158608
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211529163|gb|FL123429.1|FL123429
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACANGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACA-GGTGGAGATCTATACGCT
EST: gi|211541196|gb|FL123493.1|FL123493
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532178|gb|FL123452.1|FL123452
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32924704|gb|CF029516.1|CF029516
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152796|gb|FL123506.1|FL123506
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211529167|gb|FL123433.1|FL123433
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|31355789|gb|CD440146.1|CD440146
EST:     TCCTGCGCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211535168|gb|FL123457.1|FL123457
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|211152795|gb|FL123505.1|FL123505
EST:     CCTGCCCTTGACAAAGATGTATTGGTGGGAATTTCAGC-AACAAAGCTAG                         GTGGGTTGGAGATGTC-TCAC
genomic: CCTGCCCTTGACAAAGATGTATTG-TGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTG--TTGGAGATGTCATCAC
EST: gi|148968185|gb|EE019478.2|EE019478
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211538172|gb|FL123470.1|FL123470
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTACTGTTTT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTACTGTTTT
EST: gi|211152797|gb|FL123507.1|FL123507
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152802|gb|FL123512.1|FL123512
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211156001|gb|FL123536.1|FL123536
EST:     CCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAAC-ACAGCTAG                         GTGTTGGAGATGTCATCA
genomic: CCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGA-AGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCA
EST: gi|18654719|gb|BM499524.1|BM499524
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211156004|gb|FL123539.1|FL123539
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148962822|gb|EE013742.2|EE013742
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|6021119|gb|AW066047.1|AW066047
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211535166|gb|FL123455.1|FL123455
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148966031|gb|EE016965.2|EE016965
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|87152921|gb|DY397710.1|DY397710
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32838453|gb|CD978131.1|CD978131
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211154396|gb|FL123515.1|FL123515
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532174|gb|FL123448.1|FL123448
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532167|gb|FL123441.1|FL123441
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149098348|gb|EE184321.2|EE184321
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32925687|gb|CF030499.1|CF030499
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149105608|gb|EE291151.2|EE291151
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148966043|gb|EE016977.2|EE016977
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32827480|gb|CD967158.1|CD967158
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATC
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATC
EST: gi|18654718|gb|BM499523.1|BM499523
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149095258|gb|EE180885.2|EE180885
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|6636981|gb|AW261253.1|AW261253
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211535175|gb|FL123464.1|FL123464
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTG-TTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|211154397|gb|FL123516.1|FL123516
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGGTGGAGATCTATACGCTA
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTA
EST: gi|32921771|gb|CF026583.1|CF026583
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATTACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32838516|gb|CD978194.1|CD978194
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541200|gb|FL123497.1|FL123497
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541195|gb|FL123492.1|FL123492
EST:     TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAG                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGgtagtgactt ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
                      atctaaa  putative branch site (score: 3)
                                              tatttcc  putative PPT
                     tatctaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC