1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgattgcaggaaatgtattttaaatttgcatcagcatggttacctccttatctgtacattgatttgatcaagttaaatggacaaatacttatctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTTGGATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTG
species | Zea mays |
transcript | GRMZM2G421791_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTCCCAAACGTGAAATTTTCAGTCEST: gi|71439406|gb|DR820456.1|DR820456
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTEST: gi|13149974|gb|BG320296.1|BG320296
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: GCGTAC-GGAAAG ATTCCAAAACTTCTGCTCCATAGG-YTTTTCCAAACGTGAAATTTTCAGTTEST: gi|21760101|gb|BQ635642.1|BQ635642
genomic: GCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTCCCAAACGTGAAATTTTCAGTCEST: gi|26559312|gb|CA831547.1|CA831547
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTCCCAAACGTGAAATTTTCAGTCEST: gi|211234336|gb|FL414451.1|FL414451
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTCCCAAACGTGAAATTTTCAGTCEST: gi|87156073|gb|DY400862.1|DY400862
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
EST: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAG ATTCCAAAACTTCTGCTCCATAGGCTTTTCCCAAACGTGAAATTTTCAGTC
genomic: TGGTGGTTGTCCGAAACCTCCCTTATGAAGATCCAAGGCGTACGGGAAAGgtgcctatct ... atctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTT
ccttatctgtacattgatttgatcaagttaaatggacaaatacttatctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTTGGATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTG
cttatct CT-rich tract
aaatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgcaggaaatgtattttaaatttgcatcagcatggttacctccttatctgtacattgatttgatcaagttaaatggacaaatacttatctgtgcagATTCCAAAACTTCTGCTCCATAGGCTTTTTCCAAACGTGAAATTTTCAGTTTGGATAGATGCAAAGCTTCAGCTTGTTGCGGATCCCTATCTCCTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
tgattgc
- - - - - - -tgtattt
- - - - - - - - - - - - - -gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacaaa