1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgctatattgtttttttcagaacgttaacacaataatttggatgtagctaataacatgatctgatgtgttttttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTAAGAAATTGGAAATGACATATTCAGTGAAGTGGGTAGCGACTGATGTGT
species | Zea mays |
transcript | GRMZM2G420310_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTATTATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|60351142|gb|DN218115.1|DN218115
genomic: CTTGTTA-AATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|160481321|gb|EY254485.1|EY254485
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|78079180|gb|DV507592.1|DV507592
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGA-GAAGGTEST: gi|31356502|gb|CD440859.1|CD440859
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|71766500|gb|DR964437.1|DR964437
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|89249564|gb|DY621350.1|DY621350
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|13516079|gb|BG518355.1|BG518355
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: GAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTEST: gi|160481319|gb|EY254483.1|EY254483
genomic: GAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
EST: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGG ATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
genomic: ATTATCTTTACACGCACAAGAACATCCTTGTTAAATACAATGATAACAGGgtatgctata ... tttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGT
aacacaataatttggatgtagctaataacatgatctgatgtgttttttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTAAGAAATTGGAAATGACATATTCAGTGAAGTGGGTAGCGACTGATGTGT
tgtttttt CT-rich tract
aataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatattgtttttttcagaacgttaacacaataatttggatgtagctaataacatgatctgatgtgttttttgtgttagATAATTCATGTAAATCTCACCCAAGAGTCTCCTACGCTTCTTGAAGATGGTAAGAAATTGGAAATGACATATTCAGTGAAGTGGGTAGCGACTGATGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA