Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggaaagtcaatgcagaaacaacatgctcttctgactctgattttgcttcctataagaactgatggtattcggggacacgatcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC

Basic information

species Zea mays
transcript GRMZM2G419694_T05
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g53240.2 (Oryza sativa), 3'ss of exon 6
gtctggaaagtcaatgca------------gaaacaacatgctcttctgac------tctgattttgcttcctataagaactgatggtattcggggacacg-atcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC
||||| |||  |  || |            ||||  ||| |  |||  | |      | |  |  ||| |  | || || |  |   | |    | ||  | ||  |   | | |  | |||| | |  |||  ||| |    ||||||||||||||||||  |||| || || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||  |  
gtctgaaaatcccttgaatcattttcctttgaaaacacaaggactttggtcgaatagtatactactgcatggtttatgatcccagtatctcaaagaacctgcatggttcatgttatctcatttca-tcactttgttggatt--tgcagCTGCTCTGATGTCCGCAATTTACGAGGAGAACAAGGATGAGGATGGGTTCCTCTACATGACCTACAGTGGCGAGAACACCTTTGGGCTGCTCTAGGCGCG

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: Vv19s0090g00580.t01 (Vitis vinifera), 3'ss of exon 5
gtctggaaagtcaatgcagaaacaacatgctcttctgactctgattttgcttcctataagaactgatggtattcggggacacgatcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC
                  || | |  || |  || | |     |||    | |  |||   | |||||   ||   | |     |  | |||   | |    |||| |||  |  ||||       |||||||  |||||||| | |||||||| || ||||| || |||||||| ||||| || |||||||||||||| || ||||| || |||    ||||   |  
----------------gtgagaaagaattcctttttaat----attcaaatacacatatcga-tgatgtagtttctgtaactatttattatttatattca--tttatttgtat-tttgtgttatcacagCTGCCATGATGTCTGCCATCTATGAGGAAAACAAAGATGAGGATGGTTTCCTGTATATGACTTACAGTGGGGAAAACACATTTGGATCATTCTAACGGAA

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: PP1S26_103V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------------gtctgg-aaagtcaatgcagaaacaac-atgct------cttctgactctgattttgcttcctataagaactgatggtattcggggac-acgatcctcattctcacttgattttacttgcttgcttg---tacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC
                                               || ||  | | |       |||  ||   || |      ||| ||    |     ||   |     |||  || | || |  | | ||  |    || |        ||   | | | | |||  ||   |     |||||| ||| ||||||| || |||||||| ||| |||||||||| || |||||||| ||  | || ||||| ||||||||||| ||||| ||      |||   
gtacgttagttgaatatgcgtgcaagtgaatggagtagtggtggcttgtgtgttagattttggatggaagtaattgtgattgaaaccttgtggtcgtatgcatggcactgcgtagatgtggttgtgtctgtgcactgcagatctgagaagttagtgtagtgaatggattggatgggatgtgaatgcagCGGCTATGATGTCATCTATCTATGACGAGCACAAGGACGAAGACGGGTTCCTTTATTTTACCTACAGCGGTGAGAACACGTTCGGGCTATCGAGGATCTG

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: PP1S249_49V6.1 (Physcomitrella patens), 3'ss of exon 4
gtctggaaagtcaatgcagaaacaacatgctcttctgactctgattttgcttcctataagaactgatggtattcggggacacgatcctcattctcacttgattttac-ttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGAC-TGCTCTAGATGGC
                              |  |   | ||||  | |  || |  |         ||| ||| |  ||   | | || | | ||| |  || |  |     |    | |    ||||||||||| ||||||| || || || || ||  ||||||| ||||| || ||||| ||| | |||||||||||||| ||||||||||||  || | |  |  | 
-----------------------------ttgattctagtctgtgtattattgcactgctgttgtgtgggatttgttgatgggttacttaat-tcattgaatgtcgcaccattcaactttgtttgtgcagCTGCTATGATGTCATCCATTTACGATGAACACAAGGATGAGGACGGATTCCTGTACTTTACTTACAGTGGTGAAAACACCTTCGGAGATGTTATCAACTG-

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: EFJ09352 (Selaginella moellendorffii), 3'ss of exon 4
gtctggaaagtcaatgcagaaacaacatgctcttctgactctgattttgcttcctataagaactgatggtattcggggacacgatcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC--
                                                                 |||       | |||   |||| ||     | |||||||    || |  | | | |   || ||| ||  |||| ||  | ||||| || ||| |||||||||||||||| ||||||||| | || ||||| || ||||| |||||||| |      |||   |  
---------------------------------------------------------------gtatgagccgtcgagacgtaatcc-cacgtata-ttgatttacactgtt--cctttccttttgtagCGGCATTGATATCGACCATCTACGAGGAGCACAAGGACGAGGATGGATTCCTCTACTTCACGTACAGCGGGGAGAATACCTTCGGCCAAG--AAGAACACTA

upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 5
lower sequence: EFJ35003 (Selaginella moellendorffii), 3'ss of exon 4
gtctggaaagtcaatgcagaaacaacatgctcttctgactctgattttgcttcctataagaactgatggtattcggggacacgatcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC--
                                                                 |||       | |||   |||| ||     | |||||||    |  |  | | | |   || ||| ||  |||| ||  | ||||| || ||| |||||||||||||||| ||||||||| | || ||||| || ||||| |||||||| |      |||   |  
---------------------------------------------------------------gtatgagccgtcgagacgtaatcc-cacgtata-ttgatttacactatt--cctttccttttgtagCGGCATTGATATCGACCATCTACGAGGAGCACAAGGACGAGGATGGATTCCTCTACTTCACGTACAGCGGGGAGAATACCTTCGGCCAAG--AAGAACACTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15057145|gb|BI361117.1|BI361117
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|76287758|gb|DV027326.1|DV027326
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258766|gb|FL031018.1|FL031018
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAA-CACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACA-GGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|60352182|gb|DN219155.1|DN219155
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|14244237|gb|BG842211.2|BG842211
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTTTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|28986825|gb|CB351328.1|CB351328
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027787|gb|FL306180.1|FL306180
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAAGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|28986861|gb|CB351346.1|CB351346
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|18176526|gb|BM351459.1|BM351459
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTATGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027797|gb|FL306190.1|FL306190
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCT
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCT
EST: gi|33942601|gb|CF349201.1|CF349201
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258760|gb|FL031012.1|FL031012
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258767|gb|FL031019.1|FL031019
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027796|gb|FL306189.1|FL306189
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAG
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAG
EST: gi|18166449|gb|BM336288.1|BM336288
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|16916936|gb|BM073052.1|BM073052
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|15426911|gb|BI542733.1|BI542733
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGA
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGA
EST: gi|17929998|gb|BM266958.1|BM266958
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|91871992|gb|EB401949.1|EB401949
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCCCCAACAG                         CTGTTCTGATGTTTTCAATTTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|60358602|gb|DN225575.1|DN225575
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|33103514|gb|CF063474.1|CF063474
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|18170724|gb|BM340564.1|BM340564
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|60339197|gb|DN206170.1|DN206170
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|91871993|gb|EB401950.1|EB401950
EST:     GCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCCTTCCACCAACAG                         CTGCTCTGATGTCTTCCATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: GCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCC-TTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|17931360|gb|BM268326.1|BM268326
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|4226208|gb|AI396315.1|AI396315
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|17929854|gb|BM266814.1|BM266814
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|17931560|gb|BM268520.1|BM268520
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258763|gb|FL031015.1|FL031015
EST:     TGCTGAGAAGGCTATCTTCAT----GTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258768|gb|FL031020.1|FL031020
EST:     GCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACA-GGACGAGGATGGGGTCC
genomic: GCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCC-ACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|88749526|gb|DY533667.1|DY533667
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGAAGAAGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258762|gb|FL031014.1|FL031014
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211258761|gb|FL031013.1|FL031013
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|32935349|gb|CF040161.1|CF040161
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGTACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|18174890|gb|BM350278.1|BM350278
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027790|gb|FL306183.1|FL306183
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|18168345|gb|BM338185.1|BM338185
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|45847736|gb|CN071679.1|CN071679
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACCCCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027793|gb|FL306186.1|FL306186
EST:     GCTGAGAAGGCTATCTTCATATTTGTGAAAA-CATCCCTTC-ACCAACAG                         CTGCTCTGATGTCTTC
genomic: GCTGAGAAGGCTATCTTCATATTTGTGAAAAACA-CCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTC
EST: gi|16917035|gb|BM073098.1|BM073098
EST:     CACCCTTCCACCAACAG                         CTGCTATGATGTCTTCAATCTATCAAGAGAACAAGGACGAGGATGGGTTCC
genomic: CACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027788|gb|FL306181.1|FL306181
EST:     TGCTGAGAAGGCTATCTTCATATCTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTT
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTT
EST: gi|18167465|gb|BM337304.1|BM337304
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|18162674|gb|BM332513.1|BM332513
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|16922807|gb|BM075799.1|BM075799
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|15057263|gb|BI361235.1|BI361235
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|60349765|gb|DN216738.1|DN216738
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|17931323|gb|BM268289.1|BM268289
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|78079144|gb|DV507556.1|DV507556
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|16922901|gb|BM075893.1|BM075893
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|60353565|gb|DN220538.1|DN220538
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|91048098|gb|EB158516.1|EB158516
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
EST: gi|211027789|gb|FL306182.1|FL306182
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAG
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAG
EST: gi|60352183|gb|DN219156.1|DN219156
EST:     TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAGGCTATCTTCATATTTGTGAAAAACACCCTTCCACCAACAGgtctggaaag ... acccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggacacgatcctcattctcacttgattttacttgcttgcttgtacccgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCTCTACATGACTTACAGTGGTGAGAACACCTTCGGACTGCTCTAGATGGC
                       ttgatttta  TA-rich tract