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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagaggaacccgcgtgcatatccggcgtttcggcagacgcacacgttcttcttcttcaggtcctgtgacggacgactgaatgaagaggtgtatttgttaatttggcgcgcgtggcttgagctgagccccctcttctgttctgtttgctcgtacgatgatgcagCTGTGTGACTTCGGCCTCGCGATATGGGCGGACGACGCGGCAGCGCAGGTCACCGGCGACGACGTCGCGGGAACATTCGG

Basic information

species Zea mays
transcript GRMZM2G418432_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G418432_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g07990.1 (Oryza sativa), 3'ss of exon 5
gtgaggagaggaacccgcgtgcatatccggcgtttcggcagacgcacacgttcttcttcttcaggtcctgtgacggacgactgaatgaagaggtgtatttgttaatttggcgcgcgtggcttgagctgagccccctcttctgttctgtttgctcgtacgatgatgcagCTGTGTGACTTCGGCCTCGCGATATGGGCGGACGACGCGGCAGCGCAGGTCACCGGCGACGACGTCGCGGGAACATTCGG--------------------
                                               |        |||||||| ||        ||    ||| |    ||   ||||||| ||     | |   ||     | |||| ||             ||| || | |   ||||   |||||||||||||||||||||||| | |||||||  || |||||  | | ||||||||||||||| ||||| || ||||||||                    
---------------------------------------------gtaaaaaacatttcttcagatc-------agattcttgattcttcagagatatttgtcaac--aacac---tgcaaaaatctgaacc-------------tgtgtgat-gcgtgatg-cacagCTGTGTGACTTCGGCCTCGCGCTCTGGGCGGCGGAGGCGGCGTCTCCGGTCACCGGCGACGATGTCGCCGGCACATTCGGGTTTGTAGCTGCAGCTGCTT

upper sequence: GRMZM2G418432_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g08050.1 (Oryza sativa), 3'ss of exon 2
gtgaggagaggaacccgcgtgcatatccggcgtttcggcagacgcacacgttcttcttcttcaggtcctgtgacggacgactgaatgaagaggtgtatttgttaatttggcgcgcgtggcttgagctgagccccctcttctgttctgtttgctcgtacgatgatgcagCTGTGTGACTTCGGCCTCGCGATATGGGCGGACGACGCGGCAGCGCAGGTCACCGGCGACGACGTCGCGGGAACATTCGG
                                             | || ||     ||||||| ||        ||    ||| |    ||   ||||||| ||  | ||     |        |||| ||             ||| || |     ||||   |||||||||||||||||||||||| | |||||||  || |||||  | | ||||||||||||||| ||||| || | ||||||
-----------------------------------------gtaaaaacatt-----tcttcagatc-------agattcttgattcttcagagatatttgtcaacatagcaaaaat--------ctgaacc-------------tgtgtgat-acgtgatg-cacagCTGTGTGACTTCGGCCTCGCGCTCTGGGCGGCGGAGGCGGCGTCTCCGGTCACCGGCGACGATGTCGCCGGCAAATTCGG