1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatagcaaaactgttaatcatttgtgcgtgtatctgtactggtatgttatcctcttaagggtgcgaacttctaattcgtagttttatacttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGCGAGCCTCTTGGTGTCCAGGAAGCAGTGGAATTAATATCGAGTCACCT
species | Zea mays |
transcript | GRMZM2G417223_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTG AGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGEST: gi|31356029|gb|CD440386.1|CD440386
genomic: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttg ... ttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG
EST: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTG AGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGEST: gi|94478595|gb|EB707553.1|EB707553
genomic: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttg ... ttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG
EST: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTG AGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG
genomic: AACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttg ... ttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAG
tgttatcctcttaagggtgcgaacttctaattcgtagttttatacttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGCGAGCCTCTTGGTGTCCAGGAAGCAGTGGAATTAATATCGAGTCACCT
ttctaat putative branch site (score: 18)
ttttatacttttcttc putative PPT
tagttttatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagcaaaactgttaatcatttgtgcgtgtatctgtactggtatgttatcctcttaagggtgcgaacttctaattcgtagttttatacttttcttcagAGAATGTGCCTCCTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGCGAGCCTCTTGGTGTCCAGGAAGCAGTGGAATTAATATCGAGTCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - agcaaaa
- - - - - - - - - - - - gtgcgtg
- - - - - - - - - - - - - - - - - -tgtactg