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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcccgtcaagatatctatccttgggcaagaaatggcttgcatggtggattctcgacgccggcaatctcctagcaaacatccatcatcatgattcatggacccgatccattgcatgcagAAACTCCTGTACGCGCCGATGGGGGAGGTGCTGATCCTGCAGCCGGACGAGCGGCTGTCCCCGCACCACCACCTGCTCCCACCGGACAGCGGCATCTACC

Basic information

species Zea mays
transcript GRMZM2G416817_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416817_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g15000.1 (Oryza sativa), 3'ss of exon 4
gtaggcccgtcaagatatctatccttgggcaagaaatggcttgcatggtggattctcgacgccggcaatctcctagcaaacatccatcatcatgattcatggacc---cgatccattgca-tgcagAAACTCCTGTACGCGCCGATGGGGGAGGTGCTGATCCTGCAGCCGGACGAGCGGCTGTCCCCGCACCACCACCTGCTCCCACCGGACAGCGGCATCTACC
                         |   ||   | |    |   | ||  | | |  ||   |      |  || |||| ||  | || ||    |  |   ||   |  |  ||| || ||||||| ||| ||||||| || ||||| ||| || | |||||||| || ||| || |||| |||||||||||| |||| ||||| |||||||||||||||||||
-------------------------tcaccacttagttttcttgtttgtaaaatgttcactttgtttgcatgttaccaaa-attgaccaacaatggttgtaaccctctctgtggatttcactgcagAAGCTCTTGTACGCCCCAATGGGCGAGATGTTCATCCTGCAACCTGACAAGAGGCTATCCCCGCACCACGACCTCCTCCCGCCGGACAGCGGCATCTACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211181908|gb|FL023769.1|FL023769
EST:     TGAAGCTCGCCAACGGGAATTTCCGCAGCCACCCGTGCCTCGCGAACCAG                         AAACTCCTGTACGCGCCGATGGGGGAGGTGCTGATCCTGCAGCCGGACGAG
genomic: TGAAGCTCGCCAACGGGAATTTCCGCAGCCACCCGTGCCTCGCGAACCAGgtaggcccgt ... ttgcatgcagAAACTCCTGTACGCGCCGATGGGGGAGGTGCTGATCCTGCAGCCGGACGAG