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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatttttatattcatattatttatattactctaaaatatcatgttatttgtaaaataattaaccttcgtaccttacactattttcttagCCGAGGATCATCATAAAACCAAAATCCTGCAATGGTGTTTGGCCATTGTGCACTGCACAACAG

Basic information

species Zea mays
transcript GRMZM2G416698_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416698_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 12
gtatgtatttttatat-tcatattatttatattactctaaaatatcatgttatttgtaaaataattaaccttcgtaccttacactattttcttagCCGAGGATCATCATAAAACCAAAATCCTGCAATGGTGTTTGGCCATTGTGCACTGCACAACAG
||||| |||||  ||| ||| || | ||   |  || ||  || | |    ||   | |     | ||   |  |   || |  |||| | | ||| | ||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||
gtatg-attttcctatgtcagataagttgcctagctttatcattttaacgaataacttattctctgaaaagtattgtgtttctatattat-tcagCTGCGGATCATCATAAAGCCAAAATCCTGCAATGGTGTGGGGCCATTGTGCACTGCACAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatcatgttatttgtaaaataattaaccttcgtaccttacactattttcttagCCGAGGATCATCATAAAACCAAAATCCTGCAATGGTGTTTGGCCATTGTGCACTGCACAACAG
                                           ctattttctt  CT-rich tract
      atgttatttgtaaaat  TA-rich tract