1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cattaggatatctgtattgctgtggcaggtcttgtctgtaatccagatgtagctgtctgttgaactgtttgtaaaacatcatgttgcctctattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG
species | Zea mays |
transcript | GRMZM2G412937_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCEST: gi|7227483|gb|AW566124.1|AW566124
genomic: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAGgtgcttttat ... tattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATC
EST: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCEST: gi|211041804|gb|FL481852.1|FL481852
genomic: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAGgtgcttttat ... tattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATC
EST: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATC
genomic: CGTGGCAAATGTTGGAGACTCGAGGGCTGTTATATCAAAGGCTGGCAAAGgtgcttttat ... tattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATC
gatgtagctgtctgttgaactgtttgtaaaacatcatgttgcctctattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG
cctctatttt CT-rich tract
tttgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaggatatctgtattgctgtggcaggtcttgtctgtaatccagatgtagctgtctgttgaactgtttgtaaaacatcatgttgcctctattttgcagCTATTGCGCTCTCTGAAGATCACAAGCCAAACAGAAGTGATGAGAGGAATCGAATTGAGAGTGCTGGTGGGATAGTTATGTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatca