Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggcttcactaaatatattctatcttatcttagtacttgtcgtaggcaaaatttctattttctgtgtgctgttctcaaggaactttattttctctgtagTAGCAGAGACAAGATATCTGAATGCTAGCAATCGGGAGCTTGGTGATCATTTTCAGACAAAACGTGATGGTAAAAATGGTGTTGATGCATCAATTGAAAA

Basic information

species Zea mays
transcript GRMZM2G410191_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G410191_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g07230.1 (Oryza sativa), 3'ss of exon 1
ttggcttcactaaatatattctatcttatcttagtacttgtcgtaggcaaaatttctattttctgtgtgctgttctcaaggaactttattttctctgtagTAGCAGAGACAAGATATCTGAATGCTAGCAATCGGGAGCTTGGTGATCATTTTCAGACAAAACGTGATGGTAAAAATGGTGTTGATGCATCAATTGAAAA---
   | ||   || |||      || |   || |||||||   || |   || |||  | ||| || |||  || |||||| |  ||  |||||||| ||  ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||  ||||||||| ||||||   
---gtttgggtatatagccatgatatctactaagtactttctgttgttgaatttttcagtttttgggtgaggtgctcaagcattttgtttttctctataacagCAGAGACCAGATATCTAAATGCTAGCAATCGAGAGCTTGGTGATCATTTTCAGACAAACCTTGATGATGAAAATGGTGTAAATGCATCAACTGAAAAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaaaatttctattttctgtgtgctgttctcaaggaactttattttctctgtagTAGCAGAGACAAGATATCTGAATGCTAGCAATCGGGAGCTTGGTGATCATTTTCAGACAAAACGTGATGGTAAAAATGGTGTTGATGCATCAATTGAAAA
                                      ctttattttctctgt  CT-rich tract
     aatttctattttct  TA-rich tract